Dr Rose Upton

Dr Rose Upton

Lecturer

School of Environmental and Life Sciences

Career Summary

Biography

Dr Rose Upton is a conservation and reproductive biologist in the School of Environmental and Life Sciences. Her research focusses on the role of environmental stressors on organism health and reproduction, and application of assisted reproductive technologies, such as sperm cryopreservation and IVF, to the conservation of wildlife. This has led to her involvement in a number of initiatives to help advance application of these technologies to conservation programs within and outside of Australia. 

Rose’s PhD focused on the hormonal induction and cryopreservation of sperm from Australian tree frogs (Pelodryadidae) and included the successful production of sexually mature individuals using cryopreserved sperm and IVF in both Litoria fallax and the endangered L. aurea. This research has potential to help manage genetic diversity in both captive and wild populations and reduce the cost of captive assurance colonies.

Following the unprecedented 2019/20 megafires in Australia, Rose was part of a team funded by Department of Agriculture, Water and Environment to monitor population size and collect sperm from ten fire-affected amphibian species in both burnt and unburnt sites along the East coast of Australia. Sperm cryopreservation was performed in the field to preserve genetic diversity. This project represents a crucial step towards applying laboratory research and developed assisted reproductive technologies across wildlife conservation. Rose has an interest in applying assisted reproductive technologies across other taxa and has collaborated on projects that focus on biobanking sperm in reptiles, assessing the cost and benefits of applying biobanking to captive breeding programs and has an interest in applying these technologies to the conservation of other Australian wildlife, such as the koala, which is currently predicted to be extinct by 2050.

Rose has also transferred these skills to help develop germplasm repository capabilities for the aquatic organisms the Mexican Axolotl (Ambystoma mexicanum), the African Clawed frog (Xenopus laevis) and the California Sea Hare (Aplysia californica). This project aids in preservation of valuable transgenic and mutant research lines developed by the National stock centers, Ambystoma Genetic Stock Center and National Xenopus Resource, with clear benefits to conservation of these organisms in the wild.

Rose currently investigates the effects of environmental stressors such as climate change and disease, on organism health and reproduction. Measures of organism health, such as genetic diversity, microbiome and immunity are closely linked to reproductive output. Current projects in this space include investigations into biomarkers for both immunity and reproduction in threatened amphibians, comparisons of differential gene expression, immunity and sperm quality in both disease affected and unaffected frogs, differences in skin microbiome in captive and wild frogs to improve husbandry conditions and understanding of causes of mortality, and comparing the use of skin swabs and tissue biopsies for genetic investigations. In future, Rose plans to expand these multidisciplinary approaches to complement and expand conservation of threatened species.


Qualifications

  • Doctor of Philosophy in Biological Sciences, University of Newcastle
  • Bachelor of Science, University of Newcastle
  • Bachelor of Science (Honours), University of Newcastle

Keywords

  • assisted reproductive technologies
  • conservation
  • cryopreservation
  • herpetology
  • reproduction

Languages

  • English (Mother)
  • Spanish (Working)

Fields of Research

Code Description Percentage
410401 Conservation and biodiversity 60
310903 Animal developmental and reproductive biology 40

Professional Experience

UON Appointment

Title Organisation / Department
Lecturer University of Newcastle
School of Environmental and Life Sciences
Australia
Research Associate University of Newcastle
School of Environmental and Life Sciences
Australia
Casual Academic University of Newcastle
School of Environmental and Life Sciences
Australia

Awards

Award

Year Award
2025 2024 ACEC Welfare in research Award
Research and Innovation Services, The University of Newcastle
2018 MP Biomedicals Award for Best 3rd Year PhD Presentation
School of Environmental & Life Sciences - Faculty of Science & IT - The University of Newcastle | Australia
2016 Faculty Medal
Faculty of Science and Information Technology The University of Newcastle

Prize

Year Award
2023 Emerging Leader in Biobanking
Australasian Biospecimen Networking Association
2023 National Science Foundation Early Career Training Grant
National Science Foundation

Teaching

Code Course Role Duration
BIOL1002 Organisms to Ecosystems
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/7/2023 - 31/12/2023
RNR7029 Advanced Communications
Louisiana State University
Teacher 1/1/2021 - 30/12/2021
BIOL1001 Molecules, Cells and Organisms
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2024 - 30/6/2024
BTEC3251 Biotechnology Placement
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2023 - 31/12/2024
BIOL2010 Biochemistry
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2023 - 30/6/2024
GRS4201 Reproduction and Planetary Health
Monash University
Guest Lecturer 1/8/2022 - 31/12/2024
BIOL1003 Professional Skills for Biological Sciences I
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/7/2023 - 31/12/2024
RNR7029 Open Hardware Implementation
Louisiana State University
Teacher 1/1/2021 - 30/12/2021
BTEC3200 Cellular Biotechnology
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2023 - 31/12/2024
ENVS3002 Applied Environmental Science
College of Engineering Science and Environment | the University of Newcastle | Australia
Guest Speaker 1/1/2017 - 31/12/2017
BIOL2050 Molecular Genetics
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2024 - 31/12/2024
ENVS2006 Ecology and Management of Australian Fauna
College of Engineering, Science and Environment
Demonstrator 1/1/2017 - 30/6/2020
ENVS6530 Environmental Management
College of Engineering, Science and Environment, University of Newcastle
Course Coordinator 19/9/2022 - 30/11/2022
ENVS3003 Conservation Biology
College of Engineering, Science and Environment, University of Newcastle
Demonstrator 1/7/2018 - 31/12/2020
BIOL3090 Molecular Biology
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2023 - 31/12/2023
BIOL3020 Reproduction, Physiology and Development
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2023 - 31/12/2024
ENVS2004 Ecology
College of Engineering, Science and Environment
Lecturer/Demonstrator 1/7/2016 - 31/12/2024
BTEC1000 Introduction to Biotechnology
College of Engineering Science and Environment | the University of Newcastle | Australia
Lecturer 1/1/2023 - 30/6/2024
BIOL1003 Professional Skills for Biological Sciences I
College of Engineering, Science and Environment, University of Newcastle
Demonstrator 1/7/2018 - 31/12/2018
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Publications

For publications that are currently unpublished or in-press, details are shown in italics.


Chapter (2 outputs)

Year Citation Altmetrics Link
2025 Koch JC, Arregui L, Bodenstein S, Gutierrez-Wing T, Liu Y, Upton R, Tiersch TR, 'Integrating the Components Necessary for Germplasm Repository Program Development to Safeguard the Genetic Resources of Aquatic Species', 1-26 (2025) [B1]
DOI 10.1201/9781003269441-1
Citations Scopus - 1
2022 Clulow J, Upton R, Clulow S, 'Cryopreservation of amphibian genomes: targeting the Holy Grail, cryopreservation of maternal-haploid and embryonic-diploid genomes' (2022)
Co-authors John Clulow, Simon Clulow

Conference (3 outputs)

Year Citation Altmetrics Link
2019 Campbell L, Upton R, Doody S, Clulow J, Clulow S, 'Incubation Time And Its Effect On Sperm Motility Following Cryopreservation' (2019)
DOI 10.1016/j.cryobiol.2019.10.039
Co-authors John Clulow, Simon Clulow
2019 Upton R, Clulow S, Mahony M, Clulow J, 'The Role Of Osmolality In Amphibian Sperm Cryopreservation; A Radical New Paradigm' (2019)
DOI 10.1016/j.cryobiol.2019.10.124
Co-authors John Clulow, Simon Clulow
2018 Upton R, Clulow S, Seeto R, Wong L, Mahony M, Clulow J, 'Successful sperm cryopreservation and generated offspring of the endangered frog, Litoria aurea', Successful sperm cryopreservation and generated offspring of the endangered frog, Litoria aurea (2018)
Co-authors John Clulow, Simon Clulow

Journal article (30 outputs)

Year Citation Altmetrics Link
2025 Calatayud NE, Jacobs L, Della Togna G, Langhorne CJ, Mullen AC, Upton R, 'Hormonal induction and seasonal variation in male reproductive viability of the Southern Rocky Mountain boreal toad', Animal Reproduction Science, 273 (2025) [C1]

The Southern Rocky Mountain boreal toad (Anaxyrus boreas boreas) depends on both the rearing of wild-collected egg masses and a long-standing conservation breeding prog... [more]

The Southern Rocky Mountain boreal toad (Anaxyrus boreas boreas) depends on both the rearing of wild-collected egg masses and a long-standing conservation breeding program (CBP), the latter of which heavily relies on assisted reproductive technologies (ARTs) to support wild populations. Achieving consistent reproductive success in the CBP, however, remains a significant challenge. Natural breeding has not led to a sustained increase in reproductive capacity, prompting the exploration of exogenous hormone treatments as an alternative strategy. This study specifically examined male responses to the administration of human chorionic gonadotropin (hCG), a previously tested hormone, in combination with gonadotropin-releasing hormone agonist (GnRH-A), either individually or together, to evaluate their effects on sperm induction and viability across different seasons. Insights into how hormone treatments and seasonality influence sperm acquisition can guide managers in improving breeding outcomes within ex situ populations by enhancing their understanding of reproductive health, applying hormone treatments at the optimal time of year, and determining the best timing for high quality sperm collection. These advancements can increase reproductive capacity and support long-term genetic management through biobanking. Results indicated that combining hCG and GnRH-A yielded the highest sperm quantity and quality, although further optimization of hormone dosages could improve outcomes. Seasonal factors significantly influenced hormonal efficacy, with variations in sperm concentration and quality observed across months.

DOI 10.1016/j.anireprosci.2024.107678
2024 Upton R, Calatayud NE, Clulow S, Brett D, Burton AL, Colyvas K, Mahony M, Clulow J, 'Refrigerated storage and cryopreservation of hormonally induced sperm in the threatened frog, Litoria aurea', ANIMAL REPRODUCTION SCIENCE, 262 (2024) [C1]
DOI 10.1016/j.anireprosci.2024.107416
Citations Scopus - 2
Co-authors Rose Upton Uon, Simon Clulow, John Clulow, Kim Colyvas
2024 Upton R, Klop-Toker K, Nolan N, Wallace S, Ibbotson A, Stock S, Patel R, Jobling P, Clulow J, Mahony M, Callen A, 'Towards an integrated approach to amphibian conservation: a case study of the Littlejohn’s tree frog (Litoria littlejohni)', Australian Zoologist, 43, 599-614 (2024) [C1]

The climate crisis adds multiple threats to the already long list of stressors on global biodiversity. The result is a paucity of resources and a growing list of specie... [more]

The climate crisis adds multiple threats to the already long list of stressors on global biodiversity. The result is a paucity of resources and a growing list of species in need of conservation programs to secure their future. Conservation actions that deal with persistent and pervasive threats must focus on trying to understand the biology of the organism, its ecology and response to such threats without being paralysed by inaction due to gaps in knowledge. Following the devastating 2019/20 mega-fires across the east coast of Australia, a major effort to combine complementary conservation approaches to monitor and recover populations of threatened amphibians was mobilised. For one species, the cryptic Littlejohn's tree frog (Litoria littlejohni), this integrated conservation framework combined traditional ecological approaches including population monitoring, habitat creation, captive breeding and translocation, with established and emerging biotechnologies such as genetic analysis, biobanking, assisted reproduction and biomarkers of individual health. Littlejohn's tree frog was recently uplisted to Endangered, due to increased threat of extinction resulting from the fires, whilst already suffering from disease and reduced genetic diversity. Our integrated conservation approach attempts to accelerate recovery of a species threatened with multiple landscape persistent stressors that are not mitigated by singular conservation actions. Presented here as a case study, we argue this integrated approach used for Littlejohn's tree frog could be adopted for other species facing perilous population declines.

DOI 10.7882/AZ.2024.035
Co-authors Phillip Jobling, Alex Callen, Kaya Klop-Toker, John Clulow
2024 Coxe N, Liu Y, Arregui L, Upton R, Bodenstein S, Voss SR, Gutierrez-Wing MT, Tiersch TR, 'Establishment of a Practical Sperm Cryopreservation Pathway for the Axolotl (Ambystoma mexicanum): A Community-Level Approach to Germplasm Repository Development', ANIMALS, 14 (2024) [C1]
DOI 10.3390/ani14020206
Citations Scopus - 5Web of Science - 3
Co-authors Rose Upton Uon
2023 Anastas ZM, Byrne PG, O'Brien JK, Hobbs RJ, Upton R, Silla AJ, 'The Increasing Role of Short-Term Sperm Storage and Cryopreservation in Conserving Threatened Amphibian Species', ANIMALS, 13 (2023) [C1]

Multidisciplinary approaches to conserve threatened species are required to curb biodiversity loss. Globally, amphibians are facing the most severe declines of any vert... [more]

Multidisciplinary approaches to conserve threatened species are required to curb biodiversity loss. Globally, amphibians are facing the most severe declines of any vertebrate class. In response, conservation breeding programs have been established in a growing number of amphibian species as a safeguard against further extinction. One of the main challenges to the long-term success of conservation breeding programs is the maintenance of genetic diversity, which, if lost, poses threats to the viability and adaptive potential of at-risk populations. Integrating reproductive technologies into conservation breeding programs can greatly assist genetic management and facilitate genetic exchange between captive and wild populations, as well as reinvigorate genetic diversity from expired genotypes. The generation of offspring produced via assisted fertilisation using frozen¿thawed sperm has been achieved in a small but growing number of amphibian species and is poised to be a valuable tool for the genetic management of many more threatened species globally. This review discusses the role of sperm storage in amphibian conservation, presents the state of current technologies for the short-term cold storage and cryopreservation of amphibian sperm, and discusses the generation of cryo-derived offspring.

DOI 10.3390/ani13132094
Citations Scopus - 1Web of Science - 7
Co-authors Rose Upton Uon
2023 Hobbs RJ, Upton R, Calatayud NE, Silla AJ, Daly J, McFadden MS, OBrien JK, 'Cryopreservation Cooling Rate Impacts Post-Thaw Sperm Motility and Survival in Litoria booroolongensis', ANIMALS, 13 (2023) [C1]
DOI 10.3390/ani13193014
Citations Scopus - 6Web of Science - 3
Co-authors Rose Upton Uon
2023 Gould J, Taylor J, Davies B, Donelly R, Schmahl K, Bugir CK, Beranek CT, McGregor J, Mahony SV, Seeto R, Upton R, McHenry C, Callen A, 'Tadpole fingerprinting: Using tail venation patterns to photo-identify tadpole individuals of a threatened frog', AUSTRAL ECOLOGY, 48, 585-599 (2023) [C1]

Traditional methods for identifying individual amphibians in capture¿mark¿recapture (CMR) studies have been primarily confined to post-metamorphic stages, using artific... [more]

Traditional methods for identifying individual amphibians in capture¿mark¿recapture (CMR) studies have been primarily confined to post-metamorphic stages, using artificial markers that come with a variety of limitations. An alternative that may open CMR studies to earlier life stages involves the use of a species' natural external markers in photo-based identification. In this study, we investigated whether it was possible to distinguish tadpoles of the threatened green and golden bell frog (Litoria aurea) at the individual level based on tail venation patterns. We collected photographs of the tails of captive-raised tadpoles using a smartphone over a 4-week period. This photo-library was used to create an electronic survey where participants were asked to detect matches for query tadpoles from small image pools. We found that most participants agreed on a match for each query, with perfect consensus achieved for most queries (83%). We detected a 14% decline in perfect consensus when participants were asked to match images of tadpoles separated by longer time intervals, suggesting that it is more difficult to visually identify recapture events of L.¿aurea tadpoles over extended periods due to changes to tail appearance. However, consensus was obtained by participants for all queries, with all matches verified as being correct by the primary researcher. The strength of agreement among participants with no prior experience in matching tadpole tails suggests that there is sufficient inter-individual variation in this feature for individuals to be manually identified. We thus propose that photo-identification is likely to be a valid, non-invasive technique that can be used for short-term studies on tadpole populations that display tail venation. This offers an alternative to artificial markers that may not allow for individual identification, while also opening up tadpole monitoring programmes to citizen scientists who can be recruited online to process image data from home.

DOI 10.1111/aec.13286
Citations Scopus - 6Web of Science - 4
Co-authors Chad Beranek, John Gould, Alex Callen
2023 Gould J, Clulow J, Rippon P, Upton R, Clulow S, 'All in one: single-season multi-clutching in an ephemeral pool-breeding frog that is otherwise virtually semelparous', JOURNAL OF ZOOLOGY, 320, 226-235 (2023) [C1]
DOI 10.1111/jzo.13068
Co-authors John Gould, John Clulow, Simon Clulow
2023 Upton R, Clulow S, Colyvas K, Mahony M, Clulow J, 'Paradigm shift in frog sperm cryopreservation: reduced role for non-penetrating cryoprotectants', REPRODUCTION, 165, 583-592 (2023) [C1]
DOI 10.1530/REP-22-0486
Citations Scopus - 8Web of Science - 6
Co-authors Kim Colyvas, John Clulow, Rose Upton Uon, Simon Clulow
2023 Campbell Grant EH, Amburgey SM, Gratwicke B, Chaves VA, Belasen AM, Bickford D, Bruehl CA, Calatayud NE, Clemann N, Clulow S, Crnobrnja-Isailovic J, Dawson J, De Angelis DA, Dodd CK, Evans A, Ficetola GF, Falaschi M, Gonzalez-Mollinedo S, Green DM, Gamlen-Greene R, Griffiths RA, Halstead BJ, Hassapakis C, Heard G, Karlsson C, Kirschey T, Klocke B, Kosch TA, Novaes SK, Linhoff L, Maerz JC, Mosher BA, O'Donnell K, Ochoa-Ochoa LM, Olson DH, Ovaska K, Roberts JD, Silla AJ, Stark T, Tarrant J, Upton R, Voros J, Muths E, 'Priority research needs to inform amphibian conservation in the Anthropocene', CONSERVATION SCIENCE AND PRACTICE, 5 (2023) [C1]
DOI 10.1111/csp2.12988
Citations Scopus - 1Web of Science - 3
Co-authors Simon Clulow, Rose Upton Uon
2022 Hobbs RJ, Upton R, Keogh L, James K, Baxter-Gilbert J, Whiting MJ, 'Sperm cryopreservation in an Australian skink (Eulamprus quoyii)', Reproduction, Fertility and Development, 34, 428-437 (2022) [C1]
DOI 10.1071/RD21031
Citations Scopus - 4Web of Science - 4
2021 Campbell L, Clulow J, Howe B, Upton R, Doody S, Clulow S, 'Efficacy of short-term cold storage prior to cryopreservation of spermatozoa in a threatened lizard', REPRODUCTION FERTILITY AND DEVELOPMENT, 33, 619-+ (2021) [C1]

Assisted reproductive technologies (ARTs) have a significant role to play in reptile conservation, yet are severely lacking. Previous attempts to cryopreserve spermatoz... [more]

Assisted reproductive technologies (ARTs) have a significant role to play in reptile conservation, yet are severely lacking. Previous attempts to cryopreserve spermatozoa in the threatened lizard Varanus panoptes achieved approximately 48% motile sperm post-thaw for samples frozen immediately after collection. However, the feasibility of extended cold storage before cryopreservation has not been tested. We held V. panoptes spermatozoa at either 258Cor 48C for 8 days, assessing sperm motility at days 1, 2, 4 and 8. Subsamples were cryopreserved on days 1 and 4 following the previously reported protocol for this species. Percentage motility decreased rapidly at 258C, but did not decrease significantly until 4 days after collection at 48C, with .30% motility maintained after 8 days. There was no significant difference in post-thaw motility or viability of samples cryopreserved after 1 or 4 days storage at 48C, yielding substantial results for both parameters (mean motility 23.8% and 28.1% and mean viability 50.1% and 57.5% after 1 and 4 days respectively). We demonstrate the capacity to extend sperm viability for up to 8 days in unfrozen samples and to produce acceptable post-thaw motility in samples frozen after 4 days of storage, contributing to the development of valuable ARTs for lizards and other reptiles.

DOI 10.1071/RD20231
Citations Scopus - 8Web of Science - 9
Co-authors Simon Clulow, John Clulow
2021 Howell LG, Frankham R, Rodger JC, Witt RR, Clulow S, Upton RMO, Clulow J, Mawson PR, Calatayud NE, 'Integrating biobanking could produce significant cost benefits and minimise inbreeding for Australian amphibian captive breeding programs', REPRODUCTION FERTILITY AND DEVELOPMENT, 33, 573-587 (2021) [C1]
DOI 10.1071/RD21058
Citations Scopus - 1Web of Science - 17
Co-authors Simon Clulow, Ryan Witt, John Clulow, John Rodger
2021 Campbell L, Clulow J, Howe B, Upton R, Doody S, Clulow S, 'Erratum: Efficacy of short-term cold storage prior to cryopreservation of spermatozoa in a threatened lizard (Reproduction, Fertility and Development (2021) DOI: 10.1071/RD20231)', Reproduction Fertility and Development, 33 (2021)

Assisted reproductive technologies (ARTs) have a significant role to play in reptile conservation, yet are severely lacking. Previous attempts to cryopreserve spermatoz... [more]

Assisted reproductive technologies (ARTs) have a significant role to play in reptile conservation, yet are severely lacking. Previous attempts to cryopreserve spermatozoa in the threatened lizard Varanus panoptes achieved approximately 48% motile sperm post-thaw for samples frozen immediately after collection. However, the feasibility of extended cold storage before cryopreservation has not been tested. We held V. panoptes spermatozoa at either 25°C or 4°C for 8 days, assessing sperm motility at days 1, 2, 4 and 8. Subsamples were cryopreserved on days 1 and 4 following the previously reported protocol for this species. Percentage motility decreased rapidly at 25°C, but did not decrease significantly until 4 days after collection at 4°C, with >30% motility maintained after 8 days. There was no significant difference in post-thaw motility or viability of samples cryopreserved after 1 or 4 days storage at 4°C, yielding substantial results for both parameters (mean motility 23.8% and 28.1% and mean viability 50.1% and 57.5% after 1 and 4 days respectively). We demonstrate the capacity to extend sperm viability for up to 8 days in unfrozen samples and to produce acceptable post-thaw motility in samples frozen after 4 days of storage, contributing to the development of valuable ARTs for lizards and other reptiles.

DOI 10.1071/RD20231_CO
Co-authors John Clulow, Simon Clulow
2021 Upton R, Clulow S, Calatayud NE, Colyvas K, Seeto RGY, Wong LAM, Mahony MJ, Clulow J, 'Generation of reproductively mature offspring from the endangered green and golden bell frog Litoria aurea using cryopreserved spermatozoa', REPRODUCTION FERTILITY AND DEVELOPMENT, 33, 562-572 (2021) [C1]

Amphibians are becoming increasingly reliant on captive breeding programs for continued survival. Assisted reproductive technologies including gamete cryopreservation a... [more]

Amphibians are becoming increasingly reliant on captive breeding programs for continued survival. Assisted reproductive technologies including gamete cryopreservation and IVF can help reduce costs of breeding programs, provide insurance against extinction and assist genetic rescue in wild populations. However, the use of these technologies to produce reproductively mature offspring has only been demonstrated in a few non-model species. We aimed to optimise sperm cryopreservation in the threatened frog Litoria aurea and generate mature offspring from frozen-thawed spermatozoa by IVF. We tested three concentrations (1.4, 2.1 and 2.8 M) of the cryoprotectants dimethylsulfoxide (DMSO) and glycerol with 0.3 M sucrose. Using DMSO was more likely to result in recovery of sperm motility, vitality and acrosome integrity than glycerol, regardless of concentration, with forward progressive motility being most sensitive to damage. The lowest concentrations of 1.4 and 2.1 M provided the best protection regardless of cryoprotectant type. Spermatozoa cryopreserved in 2.1 M DMSO outperformed spermatozoa cryopreserved in equivalent concentrations of glycerol in terms of their ability to fertilise ova, resulting in higher rates of embryos hatching and several individuals reaching sexual maturity. We have demonstrated that sperm cryopreservation and subsequent offspring generation via IVF is a feasible conservation tool for L. aurea and other threatened amphibians.

DOI 10.1071/RD20296
Citations Scopus - 2Web of Science - 20
Co-authors Kim Colyvas, Simon Clulow, John Clulow
2020 Meyer NFV, Balkenhol N, Dutta T, Hofman M, Meyer J-Y, Ritchie EG, Alley C, Beranek C, Bugir CK, Callen A, Clulow S, Cove MV, Klop-Toker K, Lopez OR, Mahony M, Scanlon R, Sharma S, Shute E, Upton R, Guilbault E, Griffin AS, Hernandez Perez E, Howell LG, King J-P, Lenga D, Donoghue P, Hayward MW, 'Beyond species counts for assessing, valuing, and conserving biodiversity: response to Wallach et al. 2019', CONSERVATION BIOLOGY, 35, 369-372 (2020)
DOI 10.1111/cobi.13665
Citations Scopus - 5Web of Science - 3
Co-authors Andrea Griffin, Chad Beranek, Matthew Hayward, Simon Clulow, Ninon Meyer, Kaya Klop-Toker, Alex Callen
2020 Campbell L, Cafe SL, Upton R, Doody JS, Nixon B, Clulow J, Clulow S, 'A model protocol for the cryopreservation and recovery of motile lizard sperm using the phosphodiesterase inhibitor caffeine', CONSERVATION PHYSIOLOGY, 8 (2020) [C1]
DOI 10.1093/conphys/coaa044
Citations Scopus - 1Web of Science - 15
Co-authors John Clulow, Brett Nixon, Simon Clulow
2020 Callen A, Hayward MW, Klop-Toker K, Allen BL, Ballard G, Beranek CT, Broekhuis F, Bugir CK, Clarke RH, Clulow J, Clulow S, Daltry JC, Davies-Mostert HT, Di Blanco YE, Dixon V, Fleming PJS, Howell LG, Kerley GIH, Legge SM, Lenga DJ, Majorq T, Montgomery RA, Moseby K, Meyer N, Parker DM, Periquet S, Read J, Scanlon RJ, Shuttleworth C, Tamessar CT, Taylor WA, Tuft K, Upton RMO, Valenzuela M, Witt RR, Wuster W, 'Response to comments on "Compassionate Conservation deserves a morally serious rather than dismissive response - reply to Callen et al., 2020"', BIOLOGICAL CONSERVATION, 244 (2020)
DOI 10.1016/j.biocon.2020.108517
Citations Scopus - 3Web of Science - 3
Co-authors Ninon Meyer, Alex Callen, Matthew Hayward, Simon Clulow, John Clulow, Kaya Klop-Toker, Ryan Witt, Chad Beranek
2020 Callen A, Hayward MW, Klop-Toker K, Allen BL, Ballard G, Beranek CT, Broekhuis F, Bugir CK, Clarke RH, Clulow J, Clulow S, Daltry JC, Davies-Mostert HT, Di Blanco YE, Dixon V, Fleming PJS, Howell LG, Kerley GIH, Legge SM, Lenga DJ, Major T, Montgomery RA, Moseby K, Meyer N, Parker DM, Periquet S, Read J, Scanlon RJ, Shuttleworth C, Tamessar CT, Taylor WA, Tuft K, Upton RMO, Valenzuela M, Witt RR, Wuster W, 'Envisioning the future with 'compassionate conservation': An ominous projection for native wildlife and biodiversity', BIOLOGICAL CONSERVATION, 241 (2020) [C1]

The 'Compassionate Conservation' movement is gaining momentum through its promotion of 'ethical' conservation practices based on self-proclaimed pri... [more]

The 'Compassionate Conservation' movement is gaining momentum through its promotion of 'ethical' conservation practices based on self-proclaimed principles of 'first-do-no-harm' and 'individuals matter'. We argue that the tenets of 'Compassionate Conservation' are ideological - that is, they are not scientifically proven to improve conservation outcomes, yet are critical of the current methods that do. In this paper we envision a future with 'Compassionate Conservation' and predict how this might affect global biodiversity conservation. Taken literally, 'Compassionate Conservation' will deny current conservation practices such as captive breeding, introduced species control, biocontrol, conservation fencing, translocation, contraception, disease control and genetic introgression. Five mainstream conservation practices are used to illustrate the far-reaching and dire consequences for global biodiversity if governed by 'Compassionate Conservation'. We acknowledge the important role of animal welfare science in conservation practices but argue that 'Compassionate Conservation' aligns more closely with animal liberation principles protecting individuals over populations. Ultimately we fear that a world of 'Compassionate Conservation' could stymie the global conservation efforts required to meet international biodiversity targets derived from evidenced based practice, such as the Aichi targets developed by the Convention on Biological Diversity and adopted by the International Union for the Conservation of Nature and the United Nations.

DOI 10.1016/j.biocon.2019.108365
Citations Scopus - 4Web of Science - 40
Co-authors Ryan Witt, Kaya Klop-Toker, Matthew Hayward, Ninon Meyer, Chad Beranek, Alex Callen, Simon Clulow, John Clulow
2020 Howell LG, Frankham R, Rodger JC, Witt RR, Clulow S, Upton RMO, Clulow J, 'Integrating biobanking minimises inbreeding and produces significant cost benefits for a threatened frog captive breeding programme', CONSERVATION LETTERS, 14 (2020) [C1]
DOI 10.1111/conl.12776
Citations Scopus - 3Web of Science - 41
Co-authors Ryan Witt, Simon Clulow, John Clulow, John Rodger
2019 Gould J, Valdez JW, Upton R, 'Adhesive defence mucus secretions in the red triangle slug (Triboniophorus graeffei) can incapacitate adult frogs', ETHOLOGY, 125, 587-591 (2019) [C1]
DOI 10.1111/eth.12875
Citations Scopus - 1Web of Science - 17
Co-authors John Gould
2019 Hayward MW, Jachowski D, Bugir CK, Clulow J, Krishnamurthy R, Griffin AS, Chalmers AC, Linnell JDC, Montgomery RA, Somers MJ, Kowalczyk R, Heurich M, Caravaggi A, Marnewick KA, Di Blanco Y, Shuttleworth CM, Callen A, Weise F, Scanlon R, Moehrenschlager A, Howell LG, Upton RMO, 'The search for novelty continues for rewilding', BIOLOGICAL CONSERVATION, 236, 584-585 (2019)
DOI 10.1016/j.biocon.2019.05.041
Citations Scopus - 3Web of Science - 3
Co-authors Alex Callen, Matthew Hayward, John Clulow, Anita Chalmers, Andrea Griffin
2019 Hayward MW, Scanlon RJ, Callen A, Howell LG, Klop-Toker KL, Di Blanco Y, Balkenhol N, Bugir CK, Campbell L, Caravaggi A, Chalmers AC, Clulow J, Clulow S, Cross P, Gould JA, Griffin AS, Heurich M, Howe BK, Jachowski DS, Jhala YV, Krishnamurthy R, Kowalczyk R, Lenga DJ, Linnell JDC, Marnewick KA, Moehrenschlager A, Montgomery RA, Osipova L, Peneaux C, Rodger JC, Sales LP, Seeto RGY, Shuttleworth CM, Somers MJ, Tamessar CT, Upton RMO, Weise FJ, 'Reintroducing rewilding to restoration – Rejecting the search for novelty', Biological Conservation, 233, 255-259 (2019) [C1]
DOI 10.1016/j.biocon.2019.03.011
Citations Scopus - 6Web of Science - 4
Co-authors Matthew Hayward, Simon Clulow, John Clulow, John Gould, Andrea Griffin, Kaya Klop-Toker, Anita Chalmers, John Rodger, Alex Callen
2019 Hayward MW, Callen A, Allen BL, Ballard G, Broekhuis F, Bugir C, Clarke RH, Clulow J, Clulow S, Daltry JC, Davies-Mostert HT, Fleming PJS, Griffin AS, Howell LG, Kerley GIH, Klop-Toker K, Legge S, Major T, Meyer N, Montgomery RA, Moseby K, Parker DM, Periquet S, Read J, Scanlon RJ, Seeto R, Shuttleworth C, Somers MJ, Tamessar CT, Tuft K, Upton R, Valenzuela-Molina M, Wayne A, Witt RR, Wuster W, 'Deconstructing compassionate conservation', CONSERVATION BIOLOGY, 33, 760-768 (2019) [C1]

Compassionate conservation focuses on 4 tenets: first, do no harm; individuals matter; inclusivity of individual animals; and peaceful coexistence between humans and an... [more]

Compassionate conservation focuses on 4 tenets: first, do no harm; individuals matter; inclusivity of individual animals; and peaceful coexistence between humans and animals. Recently, compassionate conservation has been promoted as an alternative to conventional conservation philosophy. We believe examples presented by compassionate conservationists are deliberately or arbitrarily chosen to focus on mammals; inherently not compassionate; and offer ineffective conservation solutions. Compassionate conservation arbitrarily focuses on charismatic species, notably large predators and megaherbivores. The philosophy is not compassionate when it leaves invasive predators in the environment to cause harm to vastly more individuals of native species or uses the fear of harm by apex predators to terrorize mesopredators. Hindering the control of exotic species (megafauna, predators) in situ will not improve the conservation condition of the majority of biodiversity. The positions taken by so-called compassionate conservationists on particular species and on conservation actions could be extended to hinder other forms of conservation, including translocations, conservation fencing, and fertility control. Animal welfare is incredibly important to conservation, but ironically compassionate conservation does not offer the best welfare outcomes to animals and is often ineffective in achieving conservation goals. Consequently, compassionate conservation may threaten public and governmental support for conservation because of the limited understanding of conservation problems by the general public.

DOI 10.1111/cobi.13366
Citations Scopus - 7Web of Science - 61
Co-authors John Clulow, Ryan Witt, Ninon Meyer, Matthew Hayward, Simon Clulow, Andrea Griffin, Kaya Klop-Toker, Alex Callen
2019 Browne RK, Silla AJ, Upton R, Della-Togna G, Marcec-Greaves R, Shishova NV, Uteshev VK, Proaño B, Pérez OD, Mansour N, Kaurova SA, Gakhova EN, Cosson J, Dyzuba B, Kramarova LI, McGinnity D, Gonzalez M, Clulow J, Clulow S, 'Sperm collection and storage for the sustainable management of amphibian biodiversity', Theriogenology, 133, 187-200 (2019) [C1]
DOI 10.1016/j.theriogenology.2019.03.035
Citations Scopus - 5Web of Science - 5
Co-authors Simon Clulow, John Clulow
2018 Upton R, Clulow S, Mahony MJ, Clulow J, 'Generation of a sexually mature individual of the Eastern dwarf tree frog, Litoria fallax, from cryopreserved testicular macerates: proof of capacity of cryopreserved sperm derived offspring to complete development', CONSERVATION PHYSIOLOGY, 6 (2018) [C1]
DOI 10.1093/conphys/coy043
Citations Scopus - 2Web of Science - 26
Co-authors Simon Clulow, John Clulow
2018 Hall SE, Upton RMO, McLaughlin EA, Sutherland JM, 'Phosphoinositide 3-kinase/protein kinase B (PI3K/AKT) and Janus kinase/signal transducer and activator of transcription (JAK/STAT) follicular signalling is conserved in the mare ovary', REPRODUCTION FERTILITY AND DEVELOPMENT, 30, 624-633 (2018) [C1]

The mare ovary is unique in its anatomical structure; however, the signalling pathways responsible for physiological processes, such as follicular activation, remain un... [more]

The mare ovary is unique in its anatomical structure; however, the signalling pathways responsible for physiological processes, such as follicular activation, remain uncharacterised. This provided us with the impetus to explore whether signalling molecules from important folliculogenesis pathways, phosphoinositide 3-kinase/protein kinase B (PI3K/AKT) and Janus kinase/signal transducer and activator of transcription (JAK/STAT), are conserved in the mare ovary. Messenger RNA expression of six genes important in follicle development was measured using quantitative polymerase chain reaction and protein localisation of key pathway members (PI3K, AKT1, phosphatase and tensin homologue (PTEN), JAK1, STAT3 and suppressor of cytokine signalling 4 (SOCS4)) was compared in tissue from fetal and adult mare ovaries. Tissue from adult ovaries exhibited significantly increased levels of mRNA expression of PI3K, AKT1, PTEN, JAK1, STAT3 and SOCS4 compared with tissue from fetal ovaries. PI3K, AKT1, JAK1 and STAT3 demonstrated redistributed localisation, from pregranulosa cells in fetal development, to both the oocyte and granulosa cells of follicles in the adult ovary, whilst negative feedback molecules PTEN and SOCS4 were only localised to the granulosa cells in the adult ovary. These findings suggest that the PI3K/AKT and JAK/STAT signalling pathways are utilised during folliculogenesis in the mare, similarly to previously studied mammalian species, and may serve as useful biomarkers for assessment of ovary development in the horse.

DOI 10.1071/RD17024
Citations Scopus - 2Web of Science - 23
Co-authors Jessie Sutherland, Eileen Mclaughlin
2018 Clulow J, Pomering M, Herbert D, Upton R, Calatayud N, Clulow S, Mahony MJ, Trudeau VL, 'Differential success in obtaining gametes between male and female Australian temperate frogs by hormonal induction: A review', GENERAL AND COMPARATIVE ENDOCRINOLOGY, 265, 141-148 (2018) [C1]
DOI 10.1016/j.ygcen.2018.05.032
Citations Scopus - 3Web of Science - 37
Co-authors Simon Clulow, John Clulow
2018 Upton R, Clulow S, Seeto R, Wong L, Mahony M, Clulow J, 'Successful sperm cryopreservation and generated offspring of the endangered frog, Litoria aurea', Cryobiology, 85, 148-149 (2018)
DOI 10.1016/j.cryobiol.2018.10.114
2018 Campbell L, Upton R, Doody SJ, Nixon B, Clulow J, Clulow S, 'Model protocol for cryopreservation of lizard sperm using the phosphodiesterase inhibitor caffeine', Cryobiology, 85, 150-150 (2018)
DOI 10.1016/j.cryobiol.2018.10.120
Show 27 more journal articles

Other (1 outputs)

Year Citation Altmetrics Link
2024 Calatayud N, Howell L, Upton R, Tapley B, Johnson K, Browne R, Marcec-Greaves R, Williams C, O'Brien D, Hobbs R, Trudeau V, Bower D, Clulow S, Clulow J, Della Togna G, 'Amphibian assisted reproductive technologies and biobanking', Amphibian Conservation Action Plan (2024)
Co-authors Simon Clulow, John Clulow

Preprint (3 outputs)

Year Citation Altmetrics Link
2025 Calatayud NE, Jacobs L, Upton R, Chancellor S, Durrant BS, Shier DM, 'Hormonal and Environmental Drivers of Spermiation in the Endangered Mountain Yellow-Legged Frog (Rana muscosa): Toward Biologically Informed Assisted Reproductive Technologies' (2025)
DOI 10.1101/2025.08.21.671667
2023 Upton R, Calatayud N, Clulow S, Brett D, Burton A, Colyvas K, Mahony M, Clulow J, 'Refrigerated storage and cryopreservation of hormone induced sperm in a threatened frog' (2023)
DOI 10.1101/2023.07.15.548973
Co-authors Rose Upton Uon
2023 Calatayud NE, Jacobs L, Togna GD, Langhorne C, Mullen A, Upton R, 'Hormonal induction, quality assessments and the influence of seasonality on male reproductive viability in a long-term managedex situbreeding colony of Southern Rocky Mountain Boreal toads,Anaxyrus boreas boreas' (2023)
DOI 10.1101/2023.08.23.554154
Co-authors Rose Upton Uon
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Grants and Funding

Summary

Number of grants 9
Total funding $831,353

Click on a grant title below to expand the full details for that specific grant.


20252 grants / $40,095

Conservation action for the heath frog, collaboration between UoN and Aussie Ark$31,680

Funding body: Australia's Wildlife Ark Inc (Aussie Ark)

Funding body Australia's Wildlife Ark Inc (Aussie Ark)
Project Team Doctor Kaya Klop-Toker, Doctor Alex Callen, Professor Matthew Hayward, Doctor Rose Upton
Scheme Research Grants
Role Investigator
Funding Start 2025
Funding Finish 2026
GNo G2500507
Type Of Funding C3200 – Aust Not-for Profit
Category 3200
UON Y

Development of non-invasive biomarkers of stress, reproduction and immune activation in the endangered green and golden bell frog and Littlejohn’s tree frog and their integration into conservation d$8,415

Funding body: The Ecological Society of Australia Ltd (ESA)

Funding body The Ecological Society of Australia Ltd (ESA)
Project Team Associate Professor Phil Jobling, Doctor Alex Callen, Doctor Anne Ibbotson, Dr Anne Ibbotson, Doctor Kaya Klop-Toker, Doctor Rose Upton
Scheme Holsworth Wildlife Research Endowment
Role Investigator
Funding Start 2025
Funding Finish 2025
GNo G2500307
Type Of Funding C3200 – Aust Not-for Profit
Category 3200
UON Y

20242 grants / $25,622

Non-lethal gene expression studies for chytridiomycosis$18,897

Funding body: The University of Newcastle

Funding body The University of Newcastle
Project Team

Phil Jobling, Rose Upton, Anne Ibbotson, Kaya Klop-toker, Alex Callen, Sarah Stock

Scheme University of Newcastle 3Rs Grant Scheme
Role Investigator
Funding Start 2024
Funding Finish 2024
GNo
Type Of Funding Internal
Category INTE
UON N

Development of non-invasive biomarkers of stress, reproduction and immune activation in the endangered green and golden bell frog and Littlejohn’s tree frog and their integration into conservation d$6,725

Funding body: The Ecological Society of Australia Ltd (ESA)

Funding body The Ecological Society of Australia Ltd (ESA)
Project Team Associate Professor Phil Jobling, Doctor Rose Upton, Doctor Alex Callen, Dr Anne Ibbotson
Scheme Holsworth Wildlife Research Endowment
Role Investigator
Funding Start 2024
Funding Finish 2024
GNo G2300967
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

20221 grants / $7,500

George and Mary Rabb Fellowship$7,500

“Retention of genetic diversity of the endangered Littlejohn’s tree frog through sperm cryopreservation”

Rose UptonThe Amphibian Conservation Action Plan (ACAP) has identified the complimentary conservation approach of using assisted reproductive technologies (ART), such as sperm cryopreservation, as a priority area of research. Progress in translating ART research into application has been a challenge. This grant will provide me the opportunity to bridge this gap in an endangered tree frog and a co-occurring threatened ground frog, representing two of the three native Australian frog families. To incorporate cryopreservation of sperm into the Litoria littlejohni and Heleioporus australiacus breeding programs I will: 1) validate the use of a previously developed cryopreservation protocol in a related Litoria species in L. littlejohni, whilst making preliminary attempts to achieve the same for H. australiacus and 2) collect and cryopreserve sperm from at least five founder males of the University of Newcastle’s L. littlejohni breeding program, as well from 15-20 males captured at the Blue Mountains and Central Coast populations.

Funding body: Amphibian Ark

Funding body Amphibian Ark
Project Team

Rose Upton

Scheme George and Mary Rabb Fellowship
Role Lead
Funding Start 2022
Funding Finish 2023
GNo
Type Of Funding External
Category EXTE
UON N

20202 grants / $753,991

Securing threatened frogs from bushfire impact$751,982

Funding body: Department of Agriculture and Water

Funding body Department of Agriculture and Water
Project Team

Emeritus Professor Michael Mahony, Professor Matthew Hayward, Associate Professor John Clulow, Doctor Alex Callen, Doctor Kaya Klop-Toker, Dr Deb Bower, Dr Jodi Rowley, Dr S Donnellan, Mr Chris Slade, Dr Hobbs Rebecca, Dr Natalie Calatalyud, Dr Justine O’Brien, Mr Garry Daly, Rose Upton

Scheme Wildlife and Habitat Bushfire Recovery Program
Role Investigator
Funding Start 2020
Funding Finish 2021
GNo
Type Of Funding C2200 - Aust Commonwealth – Other
Category 2200
UON N

Inspiring Australia Grant for Community Engagement$2,009

Awarded for creation of a Community Wetland Mural to be included in the Art-Science Interactive Exhibition, Biomes.

Funding body: Inspiring Australia

Funding body Inspiring Australia
Project Team

Rose Upton, Alex Callen, Peter Howley

Scheme Inspiring Australia NSW
Role Investigator
Funding Start 2020
Funding Finish 2020
GNo
Type Of Funding External
Category EXTE
UON N

20192 grants / $4,145

Society for Cryobiology Travel Award$2,145

Funding body: Society for Cryobiology

Funding body Society for Cryobiology
Project Team

Rose upton

Scheme Travel Awards
Role Lead
Funding Start 2019
Funding Finish 2019
GNo
Type Of Funding External
Category EXTE
UON N

Australian Society of Herpetology PhD Student Grant$2,000

Funding body: Australian Society of Herpetologists

Funding body Australian Society of Herpetologists
Project Team

Rose Upton

Scheme PhD Student Grant
Role Lead
Funding Start 2019
Funding Finish 2020
GNo
Type Of Funding External
Category EXTE
UON N
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Research Supervision

Number of supervisions

Completed4
Current8

Current Supervision

Commenced Level of Study Research Title Program Supervisor Type
2025 PhD Testing Multiple In-situ and Ex-situ Methods for the Conservation of Littlejohn’s Tree Frog PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
2025 Honours Development of capabilities for instant testing of Batrachochytrium dendrobatidis presence Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Principal Supervisor
2025 Honours Developing protocols for Fungal Killing Assays for amphibian conservation Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Principal Supervisor
2024 Honours Optimising cryopreservation conditions for sperm from the endangered Littlejohn's tree frog (Litoria littlejohni), for the purpose of preserving genetic diversity of the species. Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Principal Supervisor
2024 Honours Effect of captive husbandry on the skin microbiome of Littlejohn’s Tree Frogs (Litoria littlejohni) Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Principal Supervisor
2024 PhD Developing Social, Economic And Conservation Arguments For Advancing Assisted Reproductive Technologies And Their Uptake To Bird And Reptile Conservation PhD (Environmental Sc), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
2022 PhD Non-Invasive Physiological Biomarkers for Stress and Immune Function in Amphibians PhD (Human Physiology), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2022 PhD Creating a working cloning model and related technologies for reversing amphibian species declines PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor

Past Supervision

Year Level of Study Research Title Program Supervisor Type
2025 PhD Post fire conservation action for the Littlejohn’s tree frog (Litoria littlejohni) PhD (Environmental Sc), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
2024 Honours The Genetic Health and Structure of Port Stephens Koalas Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Co-Supervisor
2024 Honours An insight into the reproductive biology of endangered amphibians using ultrasound technology and assessing gamete quality in outbred offspring. Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Principal Supervisor
2024 Honours The Genetic Health and Structure of Port Stephens Koalas Biological Sciences, College of Engineering Science and Environment | the University of Newcastle | Australia Co-Supervisor
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News

Dr Kaya Klop-Toker pictured in a lab next to a Littlejohn's tree frog behind glass

News • 19 Sep 2025

Scientists breed hope for endangered Littlejohn’s frog

For the first time, scientists have successfully bred the Littlejohn’s tree frog (Litoria littlejohni) in captivity. This marks a major milestone in the conservation of the endangered species.

researcher wearing a glove with a frog posed on her hand

News • 16 May 2023

New method to thaw frozen frog sperm produces better swimmers

Scientists have uncovered a superior method of freezing and thawing frog sperm leading to improved sperm quality. Driven by mass declines of frogs worldwide, research into cryopreservation of amphibian sperm has expanded for the purposes of conservation.

Dr Rose Upton

Positions

Research Associate
School of Environmental and Life Sciences
College of Engineering, Science and Environment

Lecturer
School of Environmental and Life Sciences
College of Engineering, Science and Environment

Casual Research Assistant
School of Environmental and Life Sciences
College of Engineering, Science and Environment

Casual Academic
School of Environmental and Life Sciences
College of Engineering, Science and Environment

Contact Details

Email rose.upton@newcastle.edu.au
Link Personal webpage
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