Dr Alex Callen

The novel fungal pathogen Batrachochytrium dendrobatidis (chytrid) is one of the greatest threats to amphibians worldwide. Small increases in water salinity (up to ca. 4 ppt) have been shown to limit chytrid transmission between frogs, potentially providing a way to create environmental refugia to reduce its impact at a landscape scale. However, the effect of increasing water salinity on tadpoles, a life stage confined to water, is highly variable. Increased water salinity can lead to reduced size and altered growth patterns in some species, with flow-on effects to vital rates such as survival and reproduction. It is thus important to assess potential trade-offs caused by increasing salinity as a tool to mitigate chytrid in susceptible frogs. We conducted laboratory experiments to examine the effects of salinity on the survival and development of tadpoles of a threatened frog (Litoria aurea), previously demonstrated as a suitable candidate for trialling landscape manipulations to mitigate chytrid. We exposed tadpoles to salinity ranging from 1 to 6 ppt and measured survival, time to metamorphosis, body mass and locomotor performance of post-metamorphic frogs as a measure of fitness. Survival and time to metamorphosis did not differ between salinity treatments or controls reared in rainwater. Body mass was positively associated with increasing salinity in the first 14¿days. Juvenile frogs from three salinity treatments also showed the same or better locomotor performance compared to rainwater controls, confirming that environmental salinity may influence life history traits in the larval stage, potentially as a hormetic response. Our research suggests that salt concentrations in the range previously shown to improve survival of frogs in the presence of chytrid are unlikely to impact larval development of our candidate threatened species. Our study lends support to the idea of manipulating salinity to create environmental refugia from chytrid for at least some salt-tolerant species.

Aim: Changes to the extent and severity of wildfires driven by anthropogenic climate change are predicted to have compounding negative consequences for ecological communities. While there is evidence that severe weather events like drought impact amphibian communities, the effects of wildfire on such communities are not well understood. The impact of wildfire on amphibian communities and species is likely to vary, owing to the diversity of their life-history traits. However, no previous research has identified commonalities among the amphibians at most risk from wildfire, limiting conservation initiatives in the aftermath of severe wildfire. We aimed to investigate the impacts of the unprecedented 2019¿2020 black summer bushfires on Australian forest amphibian communities. Location: Eastern coast of New South Wales, Australia. Methods: We conducted visual encounter surveys and passive acoustic monitoring across 411 sites within two regions, one in northeast and one in southeast New South Wales. We used fire severity and extent mapping in two multispecies occupancy models to assess the impacts of fire on 35 forest amphibian species. Results: We demonstrate a negative influence of severe fire extent on metacommunity occupancy and species richness in the south with weaker effects in the north¿reflective of the less severe fires that occurred in this region. Both threatened and common species were impacted by severe wildfire extent. Occupancy of burrowing species and rain forest specialists had mostly negative relationships with severe wildfire extent, while arboreal amphibians had neutral relationships. Main Conclusion: Metacommunity monitoring and adaptive conservation strategies are needed to account for common species after severe climatic events. Ecological, morphological and life-history variation drives the susceptibility of amphibians to wildfires. We document the first evidence of climate change-driven wildfires impacting temperate forest amphibian communities across a broad geographic area, which raises serious concern for the persistence of amphibians under an increasingly fire-prone climate.

The status of many amphibian populations remains unclear due to undetected declines driven by disease and difficulties in obtaining accurate population estimates. Here, we used genome complexity reduction-based sequencing technology to study the poorly understood Littlejohn¿s treefrog, Litoria littlejohni across its fragmented distribution in eastern Australia. We detected five identifiable genetic clusters, with moderate to strong genetic isolation. At a regional scale, population isolation was likely driven by population crashes, resulting in small populations impacted by founder effects. Moderate genetic isolation was detected among populations on the Woronora Plateau despite short distances between population clusters. Evidence of recent declines was apparent in three populations that had very small effective population size, reduced genetic diversity and high inbreeding values. The rates of inbreeding detected in these populations combined with their small size leave these populations at elevated risk of extinction. The Cordeaux Cluster was identified as the most robust population as it was the largest and most genetically diverse. This study exemplifies the value of employing genetic methods to study rare, cryptic species. Despite low recapture rates using traditional capture-recapture demographic methods, we were able to derive population estimates, describe patterns of gene flow, and demonstrate the need for urgent conservation management.

Traditional methods for identifying individual amphibians in capture¿mark¿recapture (CMR) studies have been primarily confined to post-metamorphic stages, using artificial markers that come with a variety of limitations. An alternative that may open CMR studies to earlier life stages involves the use of a species' natural external markers in photo-based identification. In this study, we investigated whether it was possible to distinguish tadpoles of the threatened green and golden bell frog (Litoria aurea) at the individual level based on tail venation patterns. We collected photographs of the tails of captive-raised tadpoles using a smartphone over a 4-week period. This photo-library was used to create an electronic survey where participants were asked to detect matches for query tadpoles from small image pools. We found that most participants agreed on a match for each query, with perfect consensus achieved for most queries (83%). We detected a 14% decline in perfect consensus when participants were asked to match images of tadpoles separated by longer time intervals, suggesting that it is more difficult to visually identify recapture events of L.¿aurea tadpoles over extended periods due to changes to tail appearance. However, consensus was obtained by participants for all queries, with all matches verified as being correct by the primary researcher. The strength of agreement among participants with no prior experience in matching tadpole tails suggests that there is sufficient inter-individual variation in this feature for individuals to be manually identified. We thus propose that photo-identification is likely to be a valid, non-invasive technique that can be used for short-term studies on tadpole populations that display tail venation. This offers an alternative to artificial markers that may not allow for individual identification, while also opening up tadpole monitoring programmes to citizen scientists who can be recruited online to process image data from home.

Conservation managers cannot manage what they don't know about, yet our existing biodiversity monitoring is idiosyncratic and small in scale. One of Australia's commitments to the Convention for Biological Diversity in 2015 was the creation of a national biodiversity monitoring programme. This has not yet occurred despite the urgent need to monitor common and threatened species, as highlighted by the challenges of determining the biodiversity impacts of the Black Summer fires of 2019/20. In light of improvements to automation, miniaturisation and powering devices, the world urgently needs to scale-up biodiversity monitoring to become coordinated, comprehensive and continuous across large scales. We propose the BIOMON project that could achieve this where individual sensor nodes use machine learning models to identify biodiversity via sound or photos onboard. This could be coupled with abiotic data on temperature and humidity, plus factors such as bushfire smoke. Nodes would be set within networks that transmit the results back to a central cloud repository where robust analyses are conducted and provided free to the public (along with the raw data). Network arrays could be set up across entire continents to measure the change in biodiversity. No one has achieved this yet, and significant challenges remain associated with training the algorithms, low power cellular network coverage, sensor power versus memory trade-offs, and sensor network placement. Much work is still needed to achieve these goals; however we are living in the 21st Century and such lofty goals cannot be achieved unless we start working towards them.

Individuals within amphibian populations are commonly identified using artificial marking techniques, such as toe clipping and microchipping. However, many species in this group may be strong candidates for visual identification from photographs given intraspecific variability in skin features. We investigated the potential for dorsal skin patterns to be used as natural markers for the photo-identification of both juveniles and adults of the green and golden bell frog (Litoria aurea). This is a threatened species that has come under intense population monitoring using capture-mark-recapture procedures primarily involving the use of artificial markers, with no apparent investigation of the potential for natural markers to be used instead. We collected photographs of marked individuals to determine the level of intraspecific variability in dorsal patterning within a population. This photo-database was subsequently used to create an online survey in which participants were asked to match separate images of query frogs from small image pools by comparing dorsal patterns. Photographs were taken on a smartphone device under field conditions to test whether this technique could be applied to the study of wild populations with little cost or expertise required. We showed that dorsal patterns are clear and distinct among L.¿aurea individuals and easily visualised from field-acquired images to detect recapture events by eye with a low error rate. While an overwhelming majority of adults possessed dorsal patterning that can be easily distinguished by eye, juveniles often showed a complete absence of patterning, suggesting that photo-identification may be more effective for adult stages. Nevertheless, we highlight the feasibility of collecting visual information on the natural markings of a threatened anuran, providing evidence that it may be used as a supplementary form of identification alongside more traditional techniques, highlighting a potential direction for the future monitoring of this species.

The ¿Compassionate Conservation¿ movement is gaining momentum through its promotion of ¿ethical¿ conservation practices based on self-proclaimed principles of ¿first-do-no-harm¿ and ¿individuals matter¿. We argue that the tenets of ¿Compassionate Conservation¿ are ideological - that is, they are not scientifically proven to improve conservation outcomes, yet are critical of the current methods that do. In this paper we envision a future with ¿Compassionate Conservation¿ and predict how this might affect global biodiversity conservation. Taken literally, ¿Compassionate Conservation¿ will deny current conservation practices such as captive breeding, introduced species control, biocontrol, conservation fencing, translocation, contraception, disease control and genetic introgression. Five mainstream conservation practices are used to illustrate the far-reaching and dire consequences for global biodiversity if governed by ¿Compassionate Conservation¿. We acknowledge the important role of animal welfare science in conservation practices but argue that ¿Compassionate Conservation¿ aligns more closely with animal liberation principles protecting individuals over populations. Ultimately we fear that a world of ¿Compassionate Conservation¿ could stymie the global conservation efforts required to meet international biodiversity targets derived from evidenced based practice, such as the Aichi targets developed by the Convention on Biological Diversity and adopted by the International Union for the Conservation of Nature and the United Nations.

Compassionate conservation focuses on 4 tenets: first, do no harm; individuals matter; inclusivity of individual animals; and peaceful coexistence between humans and animals. Recently, compassionate conservation has been promoted as an alternative to conventional conservation philosophy. We believe examples presented by compassionate conservationists are deliberately or arbitrarily chosen to focus on mammals; inherently not compassionate; and offer ineffective conservation solutions. Compassionate conservation arbitrarily focuses on charismatic species, notably large predators and megaherbivores. The philosophy is not compassionate when it leaves invasive predators in the environment to cause harm to vastly more individuals of native species or uses the fear of harm by apex predators to terrorize mesopredators. Hindering the control of exotic species (megafauna, predators) in situ will not improve the conservation condition of the majority of biodiversity. The positions taken by so-called compassionate conservationists on particular species and on conservation actions could be extended to hinder other forms of conservation, including translocations, conservation fencing, and fertility control. Animal welfare is incredibly important to conservation, but ironically compassionate conservation does not offer the best welfare outcomes to animals and is often ineffective in achieving conservation goals. Consequently, compassionate conservation may threaten public and governmental support for conservation because of the limited understanding of conservation problems by the general public.