Dr Aleona Swegen

Dr Aleona Swegen

ARC DECRA FELLOW

School of Environmental and Life Sciences

Career Summary

Biography

Aleona is a veterinarian and research fellow in animal fertility. She is passionate about using cutting edge, novel techniques in reproductive biology to benefit endangered species and livestock, and developing new approaches to preserve fertility.

Aleona holds a Bachelor of Veterinary Science from the University of Sydney (2010), and following several years’ work in clinical practice, obtained her PhD under Laureate Professor John Aitken at the PRC for Reproductive Science, University of Newcastle, Australia, focusing on the proteomics of stallion spermatozoa and equine embryos. As a postdoc in the same lab she continued to work on sperm metabolism and development of a novel ambient temperature sperm storage technique, as well as an endometrial organoid model for the study of embryo-maternal interactions in the horse.

In 2015 she completed an internship at the Smithsonian Conservation Biology Institute and National Zoo, Washington DC, working with Dr Pierre Comizzoli on feline endometrial culture systems.

In 2019 Aleona moved to the University of Oxford to work on the Rhino Fertility Project led by Dr Suzannah Williams at NDWRH, working towards developing techniques to culture rhinoceros ovarian tissue and generate follicles and eggs in vitro, in order to establish a supply of competent oocytes and ultimately apply these strategies in a collaborative effort to rescue the Northern White Rhino from extinction.

Aleona returned to Newcastle in 2022 to work on an ARC DECRA project examining the effects of heat stress on male fertility and offspring health. 


Qualifications

  • Doctor of Philosophy, University of Newcastle

Keywords

  • andrology
  • artificial insemination
  • equine
  • fertility
  • heat stress
  • pregnancy
  • reproduction
  • veterinary

Fields of Research

Code Description Percentage
310199 Biochemistry and cell biology not elsewhere classified 25
300904 Veterinary diagnosis and diagnostics 25
300999 Veterinary sciences not elsewhere classified 50
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Publications

For publications that are currently unpublished or in-press, details are shown in italics.


Conference (16 outputs)

Year Citation Altmetrics Link
2024 Rodriguez JO, Bucci D, Spinaci M, Swegen A, Gibb Z, 'Superoxide dismutase inhibition hastens protein phosphorylation during equine sperm capacitation', REPRODUCTION IN DOMESTIC ANIMALS, 59 (2024)
Co-authors Zamira Gibb
2022 Griffin RA, Miller K, Colyvas K, De Iuliis G, Aitken RJ, Baker MA, Gibb Z, Swegen A, 'Identifying Heat-Susceptible Stallions Using a Novel Environmental and Statistical Modelling System', ANIMAL REPRODUCTION SCIENCE, 247 (2022)
DOI 10.1016/j.anireprosci.2022.107108
Co-authors Zamira Gibb, Roisin Griffin, Mark Baker, Geoffry DeiuliIs, John Aitken, Kim Colyvas
2022 Klein EK, Bahrami M, Gunn AJ, Stephen CP, Swegen A, Aitken RJ, Gibb Z, 'Fertility of Bos indicus bull sperm stored at room temperature in SpermSafe-B for seven days', ANIMAL REPRODUCTION SCIENCE, 247 (2022)
DOI 10.1016/j.anireprosci.2022.107112
Citations Web of Science - 1
Co-authors John Aitken, Zamira Gibb
2020 Griffin R, Miller K, Baker M, Aitken RJ, De Iuliis G, Swegen A, Gibb Z, 'Environmental conditions negatively impact the fertility of select stallions via sperm DNA damage' (2020)
Co-authors Mark Baker, Geoffry DeiuliIs, Zamira Gibb, John Aitken
2020 Pollard CL, Gibb Z, Swegen A, Lawson E, Grupen CG, 'Niacin as a dietary supplement for improving mare fertility: A preliminary pharmacokinetic study', Virtual (2020)
DOI 10.1016/j.jevs.2020.103092
Co-authors Zamira Gibb
2020 Griffin R, Miller K, Swegen A, Baker M, De Iuliis G, Aitken RJ, Gibb Z, 'Measuring Oxidative DNA Damage in Stallions Susceptible to Heat Stress', ANIMAL REPRODUCTION SCIENCE, 220 (2020)
DOI 10.1016/j.anireprosci.2020.106366
Co-authors Zamira Gibb, Mark Baker, John Aitken, Roisin Griffin, Geoffry DeiuliIs
2020 Klein EK, Gunn AJ, Stephen CP, Swegen A, Aitken RJ, Gibb Z, 'Maintaining the fertility of bull spermatozoa during room temperature storage', ANIMAL REPRODUCTION SCIENCE, 220 (2020)
DOI 10.1016/j.anireprosci.2020.106369
Co-authors Zamira Gibb, John Aitken
2019 Gibb Z, Swegen A, Griffin RA, Waugh S, Aitken RJ, 'From lab to paddock: fertility enhancements for the equine breeding industry' (2019)
Co-authors Zamira Gibb
2019 Griffin RA, Swegen A, Aitken RJ, Gibb Z, 'Environmental Conditions Impact Stallion Fertility', Sydney (2019)
Co-authors Zamira Gibb, John Aitken
2019 Klein EK, Gunn AJ, Stephen CP, Swegen A, Aitken RJ, Gibb Z, 'L-carnitine is a pro-survival factor for ambient temperature storage of bull spermatozoa', Sydney (2019)
Co-authors John Aitken, Zamira Gibb
2018 Griffin RA, Swegen A, Aitken RJ, Gibb Z, 'Investigation into predictors of stallion fertility and associations with oxidative damage', 63-63 (2018)
Co-authors Zamira Gibb, Roisin Griffin, John Aitken
2018 Lawson EF, Gibb Z, de Ruijter-Villani M, Smith ND, Stout TA, Clutton-Brock A, Aitken RJ, Swegen A, 'Proteomic analysis of pregnant mare uterine fluid', 171-172 (2018)
Co-authors Zamira Gibb, John Aitken
2017 Gibb Z, Holt B, Swegen A, Lambourne SR, Aitken RJ, 'Mitochondrial permeability transition pore formation during chilling and cryopreservation of stallion spermatozoa', Perth (2017)
Co-authors John Aitken, Zamira Gibb
2017 Swegen A, Aitken RJ, Smith ND, Gibb Z, 'The serine protease testisin and its role in functional maturation of equine spermatozoa', Abstract 318-Abstract 318 (2017)
Co-authors Zamira Gibb, John Aitken
2016 Swegen A, Grupen CG, Gibb Z, De Iuliis G, Smith N, Tazawa SP, Aitken RJ, 'Novel prostaglandin regulating mechanisms revealed by proteomic analysis of early equine pregnancy', Abstract W173-Abstract W173 (2016)
Co-authors John Aitken, Geoffry DeiuliIs, Zamira Gibb
2014 Gibb Z, Swegen A, Aitken RJ, 'Fatty acid metabolism contributes to energy production in stallion spermatozoa', Newcastle, Australia (2014)
Co-authors John Aitken, Zamira Gibb
Show 13 more conferences

Journal article (49 outputs)

Year Citation Altmetrics Link
2025 Perera TRW, de Ruijter-Villani M, Gibb Z, Nixon B, Sheridan A, Stout TAE, Swegen A, Skerrett-Byrne DA, 'Systemic Changes in Early Pregnancy in the Mare: An Integrated Proteomic Analysis of Blood Plasma, Histotroph, and Yolk Sac Fluid at Day 14 Post-Ovulation', Proteomics Clinical Applications, 19 (2025) [C1]

Purpose: Embryo-maternal signaling during the establishment of pregnancy in horses remains one of the biggest mysteries in large animal physiology. Early pregnancy loss... [more]

Purpose: Embryo-maternal signaling during the establishment of pregnancy in horses remains one of the biggest mysteries in large animal physiology. Early pregnancy loss represents a major source of economic loss to the breeding industry. This study aimed to investigate the systemic changes associated with early pregnancy by mapping the proteome of blood plasma at 14 days in pregnant and non-pregnant mares. Experimental Design: Plasma proteomes were analysed¿in commercially bred pregnant (n¿=¿17) and non-pregnant (n¿=¿17) Thoroughbred mares at 14 days after ovulation, using high-resolution mass spectrometry. Day 14 histotroph and yolk sac fluid were also profiled and datasets were integrated through pathway analysis. Results: We identified 229 total protein IDs, with 12 increased and 10 decreased significantly in pregnant versus non-pregnant plasma. To gain functional insight, these data were aligned with proteomes of 14-day pregnant mare uterine fluid (n¿=¿4; 1358 IDs) and conceptus fluid (soluble proteins within the yolk sac fluid; n¿=¿4; 1152 IDs), and further interrogated using gene ontology databases and pathway analysis. Conclusions and Clinical Relevance: These analyses identified consistent systemic changes in the mare's proteome that indicate a profound and specific immune response to early pregnancy, which appears to precede the systemic endocrine response to pregnancy. Integrated pathway analysis suggests that embryo-maternal interactions in early pregnancy may mimic elements of the virus-host interaction to modulate the maternal immune response. Transthyretin (TTR) and uteroglobin (SCGB1A1) were respectively down- and upregulated in plasma while also present in uterine fluid, and are proposed to be key proteins in early pregnancy establishment. These findings contribute significantly to our knowledge of early pregnancy in the mare and identify potential new avenues for developing clinical approaches to reduce early embryo loss.

DOI 10.1002/prca.202400095
Co-authors Zamira Gibb, David Skerrett-Byrne, Brett Nixon
2025 Gibb Z, Griffin RA, Bromfield EG, Lambourne SR, Wilkins A, Jenkins C, Swegen A, Aitken RJ, De Iuliis GN, 'Evaluation of Oxidative Stress in Mammalian Spermatozoa.', Methods Mol Biol, 2897, 363-415 (2025) [C1]
DOI 10.1007/978-1-0716-4406-5_26
Co-authors Roisin Griffin, Elizabeth Bromfield, John Aitken, Geoffry DeiuliIs, Zamira Gibb
2025 Medica AJ, Swegen A, Seifi-Jamadi A, McIntosh K, Gibb Z, 'Catalase in Unexpected Places: Revisiting H2O2 Detoxification Pathways in Stallion Spermatozoa', Antioxidants (Basel, Switzerland), 14 (2025) [C1]
DOI 10.3390/antiox14060718
Citations Scopus - 2
Co-authors Zamira Gibb
2025 Yaseen M, Swegen A, Gibb Z, 'Comparative analysis of equine semen preservation techniques and DNA damage detection using Comet and SCSA assays', Journal of Equine Veterinary Science, 145, 105335-105335 (2025)
DOI 10.1016/j.jevs.2024.105335
2025 Aitken RJ, Wilkins A, Harrison N, Swegen A, Lambourne S, 'Evaluation of leucomethylene blue as a probe for assessing antioxidant activity reveals a potential application in the assessment of male fertility', Advances in Redox Research, 14 (2025) [C1]

The oxidation of leucomethylene blue (LMB) and 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid (ABTS) are colorigenic reactions, generating methylene blue (M... [more]

The oxidation of leucomethylene blue (LMB) and 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid (ABTS) are colorigenic reactions, generating methylene blue (M+) and the ABTS¿+ cation radical, respectively. In this study, we have analyzed the conditions under which these probes become oxidized and explored their application in the assessment of antioxidant activity. Using hematin as a catalyst, LMB responded to hydrogen peroxide and cumene hydroperoxide, whereas ABTS could only respond to the latter. However, in the presence of horse radish peroxidase, both probes responded specifically and dose-dependently to hydrogen peroxide. ABTS and LMB could also be oxidized in the anodic chamber of an electrochemical cell, permitting both pre-activation assays of free radical formation and post-activation assessments of free radical scavenging activity. In the pre-activation mode, both ABTS and LMB successfully revealed DMSO's capacity to inhibit free radical formation, in contrast to the 'green' solvent Cyrene¿, which was virtually devoid of such activity. In the post-activation mode, the LMB oxidation product, methylene blue, was shown to be particularly sensitive to the 2-electron reducing properties of vitamin C. In contrast, ABTS responded more sensitively to compounds, like resveratrol, that used hydrogen atom transfer and one electron reduction to achieve their antioxidant action. Only LMB-based antioxidant assessments correlated with sperm motility (P < 0.001), suggesting this probe's sensitivity to 2-electron reduction may find particular application in diagnostic andrology. Evidently, not all redox sensors are created equal, so in future assessments of antioxidant activity, it will be important to match the chemistry of the probe with its analytical application.

DOI 10.1016/j.arres.2025.100121
Co-authors John Aitken
2025 Medica A, Aitken RJ, Swegen A, Gibb Z, 'Advancements in microfluidic and electrophoretic techniques for stallion sperm isolation', Reproduction Fertility and Development, 37 (2025) [C1]
DOI 10.1071/RD25045
Co-authors Zamira Gibb, John Aitken
2024 Lawson EF, Ghosh A, Grupen C, Netherton J, Aitken RJ, Smith ND, Lim R, Drury HR, Pickford R, Gibb Z, Baker M, Tanwar PS, Swegen A, 'Investigations into the role of platelet-activating factor in the peri-conception period of the mare', REPRODUCTION, 168 (2024) [C1]
DOI 10.1530/REP-24-0049
Citations Scopus - 1Web of Science - 1
Co-authors Rebecca Lim, John Aitken, Mark Baker, Zamira Gibb
2024 Gibb Z, Aitken RJ, Sheridan AR, Holt B, Waugh S, Swegen A, 'The effects of oxidative stress and intracellular calcium on mitochondrial permeability transition pore formation in equine spermatozoa', FASEB BIOADVANCES, 6, 143-158 (2024) [C1]
DOI 10.1096/fba.2023-00051
Citations Scopus - 1Web of Science - 1
Co-authors John Aitken, Zamira Gibb
2024 Perera TRW, Bromfield EG, Gibb Z, Nixon B, Sheridan AR, Rupasinghe T, Skerrett-Byrne DA, Swegen A, 'Plasma Lipidomics Reveals Lipid Signatures of Early Pregnancy in Mares', INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 25 (2024) [C1]
DOI 10.3390/ijms252011073
Citations Scopus - 4
Co-authors Elizabeth Bromfield, Brett Nixon, David Skerrett-Byrne, Zamira Gibb
2024 Cowl VB, Comizzoli P, Appeltant R, Bolton RL, Browne RK, Holt WV, Penfold LM, Swegen A, Walker SL, Williams SA, 'Cloning for the Twenty-First Century and Its Place in Endangered Species Conservation', ANNUAL REVIEW OF ANIMAL BIOSCIENCES, 12, 91-112 (2024) [C1]
DOI 10.1146/annurev-animal-071423-093523
Citations Scopus - 2Web of Science - 5
2024 Houston BJ, Chan HY, Clark Z, Swegen A, Wooldridge AL, Green ES, 'Reproductive mechanisms, pathologies, and health inclusivity: insights from the 2023 Annual Meeting of the Society for Reproductive Biology', REPRODUCTION FERTILITY AND DEVELOPMENT, 36 (2024) [C1]
DOI 10.1071/RD24182
2024 Browne RK, Luo Q, Wang P, Mansour N, Kaurova SA, Gakhova EN, Shishova NV, Uteshev VK, Kramarova LI, Venu G, Vaissi S, Taheri-Khas Z, Heshmatzad P, Bagaturov MF, Janzen P, Naranjo RE, Swegen A, Strand J, McGinnity D, Dunce I, 'Ecological Civilisation and Amphibian Sustainability through Reproduction Biotechnologies, Biobanking, and Conservation Breeding Programs (RBCs)', ANIMALS, 14 (2024) [C1]
DOI 10.3390/ani14101455
Citations Scopus - 6Web of Science - 2
2024 Lawson EF, Pickford R, Aitken RJ, Gibb Z, Grupen CG, Swegen A, 'Mapping the lipidomic secretome of the early equine embryo', FRONTIERS IN VETERINARY SCIENCE, 11 (2024) [C1]
DOI 10.3389/fvets.2024.1439550
Co-authors Zamira Gibb, John Aitken
2024 Browne RK, Luo Q, Wang P, Mansour N, Kaurova SA, Gakhova EN, Shishova NV, Uteshev VK, Kramarova LI, Venu G, Bagaturov MF, Vaissi S, Heshmatzad P, Janzen P, Swegen A, Strand J, Mcginnity D, 'The Sixth Mass Extinction and Amphibian Species Sustainability Through Reproduction and Advanced Biotechnologies, Biobanking of Germplasm and Somatic Cells, and Conservation Breeding Programs (RBCs)', ANIMALS, 14 (2024) [C1]
DOI 10.3390/ani14233395
Citations Scopus - 5
2023 Perera TRW, Gibb Z, Bromfield EG, Rupasinghe T, Skerrett-Byrne DA, Swegen A, 'Early pregnancy associated changes in systemic lipid profiles of mares revealed by high resolution mass spectrometry', Journal of Equine Veterinary Science, 125, 104780-104780 (2023) [C1]
DOI 10.1016/j.jevs.2023.104780
Co-authors Elizabeth Bromfield, Zamira Gibb
2023 Appeltant R, Hermes R, Holtze S, Modina SC, Galli C, Bjarkadottir BD, Adeniran BV, Wei X, Swegen A, Hildebrandt TB, Williams SA, 'The neonatal southern white rhinoceros ovary contains oogonia in germ cell nests', COMMUNICATIONS BIOLOGY, 6 (2023) [C1]
DOI 10.1038/s42003-023-05256-5
Citations Scopus - 4
2023 Lawson EF, Griffin RA, Ghosh A, Gibb Z, Baker MA, Tanwar PS, Swegen A, 'Deciphering the influence of mare oviductal organoid secretions on equine spermatozoa', Journal of Equine Veterinary Science, 125, 104657-104657 (2023)
DOI 10.1016/j.jevs.2023.104657
Co-authors Zamira Gibb
2023 Gibb Z, Clulow JR, Maclellan LJ, Morris LHA, Aitken RJ, Swegen A, 'Storing stallion sperm in SpermSafe™ at 17°C may improve fertility by reducing mPTP formation', Journal of Equine Veterinary Science, 125, 104589-104589 (2023) [C1]
DOI 10.1016/j.jevs.2023.104589
Co-authors Zamira Gibb
2023 Waugh SJ, Lawson EF, Gibb Z, Skerrett-Byrne DA, Swegen A, 'Embryo-maternal interactions revealed by phosphoproteomic analysis of endometrial organoids exposed to embryo secretome', Journal of Equine Veterinary Science, 125, 104794-104794 (2023) [C1]
DOI 10.1016/j.jevs.2023.104794
Co-authors Zamira Gibb
2023 Griffin RA, Harrison N, Swegen A, Miller K, DeIuliis G, Rebourcet D, Aitken RJ, Gibb Z, 'Age-related DNA damage in stallions: an ongoing investigation', Journal of Equine Veterinary Science, 125, 104590-104590 (2023) [C1]
DOI 10.1016/j.jevs.2023.104590
Co-authors Zamira Gibb
2023 Swegen A, Appeltant R, Williams SA, 'Cloning in action: can embryo splitting, induced pluripotency and somatic cell nuclear transfer contribute to endangered species conservation?', BIOLOGICAL REVIEWS, 98, 1225-1249 (2023) [C1]
DOI 10.1111/brv.12951
Citations Scopus - 1Web of Science - 6
2022 Pollard C-L, Younan A, Swegen A, Gibb Z, Grupen CG, 'Insights into the NAD(+) biosynthesis pathways involved during meiotic maturation and spindle formation in porcine oocytes', JOURNAL OF REPRODUCTION AND DEVELOPMENT, 68, 216-224 (2022) [C1]
DOI 10.1262/jrd.2021-130
Citations Scopus - 1Web of Science - 13
Co-authors Zamira Gibb
2022 Pollard C-L, Gibb Z, Swegen A, Grupen CG, 'NAD plus , Sirtuins and PARPs: enhancing oocyte developmental competence', JOURNAL OF REPRODUCTION AND DEVELOPMENT, 68, 345-354 (2022) [C1]
Citations Scopus - 1Web of Science - 10
Co-authors Zamira Gibb
2022 Perera TRW, Skerrett-Byrne DA, Gibb Z, Nixon B, Swegen A, 'The Future of Biomarkers in Veterinary Medicine: Emerging Approaches and Associated Challenges', ANIMALS, 12 (2022) [C1]
DOI 10.3390/ani12172194
Citations Scopus - 2Web of Science - 10
Co-authors David Skerrett-Byrne, Brett Nixon, Zamira Gibb
2022 Lawson EF, Grupen CG, Baker MA, Aitken RJ, Swegen A, Pollard C-L, Gibb Z, 'Conception and early pregnancy in the mare: lipidomics the unexplored frontier', REPRODUCTION AND FERTILITY, 3, R1-R18 (2022) [C1]

Lipids are dynamic biological molecules that play key roles in metabolism, inflammation, cell signalling and structure. They are biologically significant in the physiol... [more]

Lipids are dynamic biological molecules that play key roles in metabolism, inflammation, cell signalling and structure. They are biologically significant in the physiology of conception and reproduction. Many of the mechanisms surrounding equine conception and the early feto-maternal dialogue are yet to be understood at a biochemical level. Recently, lipidomic technologies have advanced considerably and analytical strategies have been enhanced and diversified. Consequently, in-depth lipidomic exploration now has the potential to reveal new lipid biomarkers and biochemical relationships that improve our understanding of the processes leading to efficient and successful reproduction. This review considers the role of lipids in conception and establishment of pregnancy, providing new insights into the enigmatic pathways governing early reproductive physiology of the mare.

DOI 10.1530/RAF-21-0104
Citations Scopus - 9Web of Science - 8
Co-authors John Aitken, Mark Baker, Zamira Gibb
2022 Klein EK, Swegen A, Gunn AJ, Stephen CP, Aitken RJ, Gibb Z, 'The future of assessing bull fertility: Can the 'omics fields identify usable biomarkers?', BIOLOGY OF REPRODUCTION, 106, 854-864 (2022) [C1]
DOI 10.1093/biolre/ioac031
Citations Scopus - 3Web of Science - 22
Co-authors John Aitken, Zamira Gibb
2022 Pollard CL, Gibb Z, Clulow J, Ruiz A, Sheridan A, Bahrami M, Swegen A, Grupen CG, 'NAD(+) precursor concentrations are elevated in the follicular fluid of mares following oral supplementation of nicotinic acid', JOURNAL OF EQUINE VETERINARY SCIENCE, 113 (2022)
DOI 10.1016/j.jevs.2022.103961
Citations Web of Science - 1
Co-authors Zamira Gibb
2022 Pollard C-L, Gibb Z, Clulow J, Ruiz A, Sheridan A, Bahrami M, Swegen A, Grupen CG, 'Supplemental Nicotinic Acid Elevates NAD(+) Precursors in the Follicular Fluid of Mares', ANIMALS, 12 (2022) [C1]
DOI 10.3390/ani12111383
Citations Scopus - 8Web of Science - 6
Co-authors Zamira Gibb
2022 Pollard C-L, Gibb Z, Swegen A, Lawson EF, Grupen CG, 'Nicotinic acid supplementation at a supraphysiological dose increases the bioavailability of NAD + precursors in mares (vol 105, pg 1154, 2021)', JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION, 106 720-720 (2022)
DOI 10.1111/jpn.13709
Co-authors Zamira Gibb
2022 Griffin RA, Swegen A, Baker MA, Ogle RA, Smith N, Aitken RJ, Skerrett-Byrne DA, Fair S, Gibb Z, 'Proteomic analysis of spermatozoa reveals caseins play a pivotal role in preventing short-term periods of subfertility in stallions', BIOLOGY OF REPRODUCTION, 106, 741-755 (2022) [C1]
DOI 10.1093/biolre/ioab225
Citations Scopus - 1Web of Science - 10
Co-authors David Skerrett-Byrne, John Aitken, Zamira Gibb, Roisin Griffin, Mark Baker
2021 Medica AJ, Aitken RJ, Nicolson GL, Sheridan AR, Swegen A, Iuliis GND, Gibb Z, 'Glycerophospholipids protect stallion spermatozoa from oxidative damage in vitro', Reproduction and Fertility, 2, 199-209 (2021) [C1]
DOI 10.1530/RAF-21-0028
Citations Scopus - 1Web of Science - 6
Co-authors Geoffry DeiuliIs, Zamira Gibb, John Aitken
2021 Hildebrandt TB, Hermes R, Goeritz F, Appeltant R, Colleoni S, de Mori B, Diecke S, Drukker M, Galli C, Hayashi K, Lazzari G, Loi P, Payne J, Renfree M, Seet S, Stejskal J, Swegen A, Williams SA, Zainuddin ZZ, Holtze S, 'The ART of bringing extinction to a freeze- History and future of species conservation, exemplified by rhinos', THERIOGENOLOGY, 169, 76-88 (2021) [C1]

The ongoing mass extinction of animal species at an unprecedented rate is largely caused by human activities. Progressive habitat destruction and fragmentation is resul... [more]

The ongoing mass extinction of animal species at an unprecedented rate is largely caused by human activities. Progressive habitat destruction and fragmentation is resulting in accelerated loss of biodiversity on a global scale. Over decades, captive breeding programs of non-domestic species were characterized by efforts to optimize species-specific husbandry, to increase studbook-based animal exchange, and to improve enclosure designs. To counter the ongoing dramatic loss of biodiversity, new approaches are warranted. Recently, new ideas, particularly the application of assisted reproduction technologies (ART), have been incorporated into classical zoo breeding programs. These technologies include semen and oocyte collection, artificial insemination, and in-vitro embryo generation. More futuristic ideas of advanced ART (aART) implement recent advances in biotechnology and stem-cell related approaches such as cloning, inner cell mass transfer (ICM), and the stem-cell-associated techniques (SCAT) for the generation of gametes and ultimately embryos of highly endangered species, such as the northern white rhinoceros (Ceratotherium simum cottoni) of which only two female individuals are left. Both, ART and aART greatly depend on and benefit from the rapidly evolving cryopreservation techniques and biobanking not only of genetic, but also of viable cellular materials suitable for the generation of induced pluripotent stem cells (iPSC). The availability of cryopreserved materials bridges gaps in time and space, thereby optimizing the available genetic variability and enhancing the chance to restore viable populations.

DOI 10.1016/j.theriogenology.2021.04.006
Citations Scopus - 5Web of Science - 38
2021 Pollard C-L, Gibb Z, Hawdon A, Swegen A, Grupen CG, 'Supplementing media with NAD(+) precursors enhances the in vitro maturation of porcine oocytes', JOURNAL OF REPRODUCTION AND DEVELOPMENT, 67, 319-326 (2021) [C1]

In vitro maturation (IVM) is an important reproductive technology used to produce embryos in vitro. However, the developmental potential of oocytes sourced for IVM is m... [more]

In vitro maturation (IVM) is an important reproductive technology used to produce embryos in vitro. However, the developmental potential of oocytes sourced for IVM is markedly lower than those matured in vivo. Previously, NAD+-elevating treatments have improved oocyte quality and embryo development in cattle and mice, suggesting that NAD+ is important during oocyte maturation. The aim of this study was to examine the effects of nicotinic acid (NA), nicotinamide (NAM) and nicotinamide mononucleotide (NMN) on oocyte maturation and subsequent embryo development. Porcine oocytes from small antral follicles were matured for 44 h in a defined maturation medium supplemented with NA, NAM and resveratrol or NMN. Mature oocytes were artificially activated and presumptive zygotes cultured for 7 days. Additionally, oocytes were matured without treatment then cultured for 7 days with NMN. Supplementing the IVM medium with NA improved maturation and blastocyst formation while NAM supplementation improved cleavage rates compared with untreated controls. Supplementing the IVM or embryo culture media with NMN had no effect on maturation or embryo development. The results show that supplementing the maturation medium with NA and NAM improved maturation and developmental potential of porcine oocytes.

DOI 10.1262/jrd.2021-080
Citations Scopus - 1Web of Science - 14
Co-authors Zamira Gibb
2021 Pollard C-L, Gibb Z, Swegen A, Lawson EF, Grupen CG, 'Nicotinic acid supplementation at a supraphysiological dose increases the bioavailability of NAD(+) precursors in mares', JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION, 105, 1154-1164 (2021) [C1]
DOI 10.1111/jpn.13589
Citations Scopus - 4Web of Science - 4
Co-authors Zamira Gibb
2021 Swegen A, 'Maternal recognition of pregnancy in the mare: does it exist and why do we care?', REPRODUCTION, 161, R139-R155 (2021) [C1]

Maternal recognition of pregnancy (MRP) is a process by which an early conceptus signals its presence to the maternal system and prevents the lysis of the corpus luteum... [more]

Maternal recognition of pregnancy (MRP) is a process by which an early conceptus signals its presence to the maternal system and prevents the lysis of the corpus luteum, thus ensuring a maternal milieu supportive of pregnancy continuation. It is a fundamental aspect of reproductive biology, yet in the horse, the mechanism underlying MRP remains unknown. This review seeks to address some of the controversies surrounding the evidence and theories of MRP in the equine species, such as the idea that the horse does not conform to the MRP paradigm established in other species or that equine MRP involves a mechanical, rather than chemical, signal. The review examines the challenges of studying this particularly clandestine phenomenon along with the new tools in scientific research that will drive this quest forward in coming years, and discusses the value of knowledge gleaned along this path in the context of clinical applications for improving breeding outcomes in the horse industry.

DOI 10.1530/REP-20-0437
Citations Scopus - 2Web of Science - 20
2020 Griffin RA, Swegen A, Baker M, Aitken RJ, Skerrett-Byrne DA, Silva Rodriguez A, Martin-Cano FE, Nixon B, Pena FJ, Delehedde M, Sergeant N, Gibb Z, 'Mass spectrometry reveals distinct proteomic profiles in high-and low-quality stallion spermatozoa', REPRODUCTION, 160, 695-707 (2020) [C1]

The horse breeding industry relies upon optimal stallion fertility. Conventional sperm assessments provide limited information regarding ejaculate quality and are not i... [more]

The horse breeding industry relies upon optimal stallion fertility. Conventional sperm assessments provide limited information regarding ejaculate quality and are not individually predictive of fertilizing potential. The aim of this study was to harness mass spectrometry to compare the proteomic profiles of high- and low-quality stallion spermatozoa, with the ultimate goal of identifying fertility biomarker candidates. Extended stallion semen (n = 12) was fractionated using Percoll density gradients to isolate low-quality and high-quality sperm populations. Motility and morphological assessments were carried out, and proteomic analyses was conducted using UHPLC-MS/MS. High-quality spermatozoa recorded higher total (95.2 ± 0.52% vs 70.6 ± 4.20%; P = 0.001) and progressive motilities (43.4 ± 3.42% vs 27.3 ± 4.32%; P = 0.05), and a higher proportion of morphologically normal cells (50.2 ± 4.34% vs 38.8 ± 2.72%; P = 0.05). In total, 1069 proteins were quantified by UHPLC-MS/MS, of which 22 proteins were significantly more abundant in the high-quality sperm population (P = 0.05). A-kinase anchor protein 4 (AKAP4) and Hexokinase 1 (HK1) were considered possible biomarker candidates and their differential expression was confirmed by immunoblot. Protein expression was significantly correlated with total (AKAP4 R2 = 0.38, P = 0.01; HK1 R2 = 0.46, P = 0.001) and progressive motilities (AKAP4 R2 = 0.51, P = 0.001; HK1 R2 = 0.55, P = 0.01), percentage rapid (AKAP4 R2 = 0.29, P = 0.05; HK1 R2 = 0.58, P = 0.001), straight-line velocity (HK1 R2 = 0.50, P = 0.01) and straightness (HK1 R2 = 0.40, P = 0.01). Furthermore, AKAP4 was highly susceptible to adduction by 4-hydroxynonenal (4HNE), which resulted in a global reduction in the phosphorylation profiles following capacitation. In conclusion, the proteomic profiles of high- and low-quality stallion spermatozoa differ substantially, and proteins such as AKAP4 and HK1 could serve as biomarkers of ejaculate quality.

DOI 10.1530/REP-20-0284
Citations Scopus - 3Web of Science - 33
Co-authors John Aitken, Brett Nixon, David Skerrett-Byrne, Mark Baker, Roisin Griffin, Zamira Gibb
2020 Pollard CL, Gibb Z, Swegen A, Lawson E, Grupen CG, 'Niacin as a dietary supplement for improving mare fertility: A preliminary pharmacokinetic study', Journal of Equine Veterinary Science, 89, 103092-103092 (2020)
DOI 10.1016/j.jevs.2020.103092
Co-authors Zamira Gibb
2019 Swegen A, Smith ND, Gibb Z, Curry BJ, Aitken RJ, 'The serine protease testisin is present on the surface of capacitated stallion spermatozoa and interacts with key zona pellucida binding proteins', Andrology, 7, 199-212 (2019) [C1]
DOI 10.1111/andr.12569
Citations Scopus - 1Web of Science - 1
Co-authors John Aitken, Zamira Gibb
2019 Clulow J, Swegen A, Aitken J, Gibb Z, 'Preliminary insemination trial to determine the fertility of stallion sperm stored for 3 and 7 days at 17ºC in a long term liquid storage medium', Clinical Theriogenology, 11 461-461
DOI 10.58292/ct.v11.10220
2019 Griffin RA, Baker M, Aitken RJ, Swegen A, Gibb Z, 'What makes a fertile sperm? Unique molecular attributes of stallion fertility.', Reproduction (Cambridge, England), 158, R125-R137 (2019) [C1]
DOI 10.1530/rep-19-0060
Citations Scopus - 2Web of Science - 2
Co-authors John Aitken, Mark Baker, Roisin Griffin, Zamira Gibb
2018 Griffin RA, Swegen A, Aitken JR, Gibb Z, 'Investigation Into Predictors of Stallion Fertility and Associations With Oxidative Damage', Journal of Equine Veterinary Science, 66 63-63 (2018)
DOI 10.1016/j.jevs.2018.05.035
Co-authors Zamira Gibb, John Aitken
2018 Swegen A, Clulow JR, Baker M, Aitken RJ, Tram QT, Gibb Z, 'Unraveling Infertility: Deciphering the Molecular Basis of Idiopathic Infertility in a Thoroughbred Stallion', Journal of Equine Veterinary Science, 66 90-90 (2018)
DOI 10.1016/j.jevs.2018.05.056
Co-authors Mark Baker, Zamira Gibb, John Aitken
2018 Lawson EF, Gibb Z, de Ruijter-Villani M, Smith ND, Stout TA, Clutton-Brock A, Aitken JR, Swegen A, 'Proteomic Analysis of Pregnant Mare Uterine Fluid', Journal of Equine Veterinary Science, 66, 171-172 (2018)
DOI 10.1016/j.jevs.2018.05.064
Co-authors Zamira Gibb, John Aitken
2018 Gibb Z, Clulow JR, Aitken RJ, Swegen A, 'First Publication to Describe a Protocol for the Liquid Storage of Stallion Spermatozoa for 7 Days', Journal of Equine Veterinary Science, 66, 37-40 (2018)
DOI 10.1016/j.jevs.2018.05.016
Co-authors Zamira Gibb
2017 Swegen A, Grupen CG, Gibb Z, Baker M, de Ruijter-Villani M, Smith ND, Stout TAE, Aitken RJ, 'From Peptide Masses to Pregnancy Maintenance: A Comprehensive Proteomic Analysis of The Early Equine Embryo Secretome, Blastocoel Fluid and Capsule.', Proteomics, 17, 1-13 (2017) [C1]
DOI 10.1002/pmic.201600433
Citations Scopus - 3Web of Science - 3
Co-authors John Aitken, Mark Baker, Zamira Gibb
2016 Swegen A, Aitken RJ, 'Prospects for immunocontraception in feral horse population control: exploring novel targets for an equine fertility vaccine', REPRODUCTION FERTILITY AND DEVELOPMENT, 28, 853-863 (2016) [C1]
DOI 10.1071/RD14280
Citations Scopus - 1Web of Science - 10
Co-authors John Aitken
2016 Swegen A, Lambourne SR, Aitken RJ, Gibb Z, 'Rosiglitazone Improves Stallion Sperm Motility, ATP Content, and Mitochondrial Function', BIOLOGY OF REPRODUCTION, 95 (2016) [C1]
DOI 10.1095/biolreprod.116.142687
Citations Scopus - 5Web of Science - 50
Co-authors John Aitken, Zamira Gibb
2015 Swegen A, Curry BJ, Gibb Z, Lambourne SR, Smith ND, Aitken RJ, 'Investigation of the stallion sperm proteome by mass spectrometry', REPRODUCTION, 149, 235-244 (2015) [C1]

Stallion spermatozoa continue to present scientific and clinical challenges with regard to the biological mechanisms responsible for their survival and function. In par... [more]

Stallion spermatozoa continue to present scientific and clinical challenges with regard to the biological mechanisms responsible for their survival and function. In particular, deeper understanding of sperm energy metabolism, defence against oxidative damage and cell-cell interactions should improve fertility assessment and the application of advanced reproductive technologies in the equine species. In this study, we used highly sensitive LC-MS/MS technology and sequence database analysis to identify and characterise the proteome of Percoll-isolated ejaculated equine spermatozoa, with the aim offurthering our understanding of this cell's complex biological machinery. We were able to identify 9883 peptides comprising 1030 proteins, which were subsequently attributed to 975 gene products. Gene ontology analysis for molecular and cellular processes revealed new information about the metabolism, antioxidant defences and receptors of stallion spermatozoa. Mitochondrial proteins and those involved in catabolic processes constituted dominant categories. Several enzymes specific to ß-oxidation of fatty acids were identified, and further experiments were carried out to ascertain their functional significance. Inhibition of carnitine palmitoyl transferase 1, a rate-limiting enzyme of ß-oxidation, reduced motility parameters, indicating that b-oxidation contributes to maintenance of motility in stallion spermatozoa.

DOI 10.1530/REP-14-0500
Citations Scopus - 8Web of Science - 3
Co-authors John Aitken, Zamira Gibb
2014 Swegen A, Aitken RJ, 'Characterisation of the stallion sperm proteome', Journal of Equine Veterinary Science, 34 35-37 (2014)
DOI 10.1016/j.jevs.2013.10.020
Show 46 more journal articles

Other (1 outputs)

Year Citation Altmetrics Link
2017 Swegen A, Gibb Z, Aitken RJ, 'Position Paper: Fertility intervention and toxicant technologies for the eradication of rodents on Lord Howe Island', . Office of the Chief Scientist and Engineer: NSW State Government (2017)
Co-authors Zamira Gibb, John Aitken
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Grants and Funding

Summary

Number of grants 11
Total funding $3,228,494

Click on a grant title below to expand the full details for that specific grant.


20244 grants / $1,151,093

Early pregnancy in the mare: mechanisms of immune recognition and novel assays for pregnancy testing$498,845

Funding body: AgriFutures Australia

Funding body AgriFutures Australia
Project Team Doctor Aleona Swegen, Jiajia Zhou
Scheme Thoroughbred Horse Program
Role Lead
Funding Start 2024
Funding Finish 2027
GNo G2300340
Type Of Funding C1400 - Aust Competitive - Commonwealth Rural R&D
Category 1400
UON Y

Pioneering reproductive biotechnology innovations for equine breeding$472,248

Funding body: ARC (Australian Research Council)

Funding body ARC (Australian Research Council)
Project Team Doctor Aleona Swegen, David Ali, Dr Amber Clutton-Brock, Dr Amber Clutton-Brock, Alison Coutts, Associate Professor Zamira Gibb, Doctor Jacinta Martin, Professor Brett Nixon
Scheme Linkage Projects
Role Lead
Funding Start 2024
Funding Finish 2026
GNo G2300379
Type Of Funding C1200 - Aust Competitive - ARC
Category 1200
UON Y

Pioneering reproductive biotechnology innovations for equine breeding$90,000

Funding body: EquiBreed UK Ltd

Funding body EquiBreed UK Ltd
Project Team Dr Amber Clutton-Brock, Dr Amber Clutton-Brock, Alison Coutts, Associate Professor Zamira Gibb, Doctor Jacinta Martin, Professor Brett Nixon, Doctor Aleona Swegen, David Ali
Scheme Linkage Projects Partner Funding
Role Lead
Funding Start 2024
Funding Finish 2026
GNo G2401555
Type Of Funding C3400 – International For Profit
Category 3400
UON Y

Pioneering reproductive biotechnology innovations for equine breeding$90,000

Funding body: Memphasys Limited

Funding body Memphasys Limited
Project Team Dr Amber Clutton-Brock, Associate Professor Zamira Gibb, Doctor Jacinta Martin, Professor Brett Nixon, Doctor Aleona Swegen, David Ali
Scheme Linkage Projects Partner Funding
Role Lead
Funding Start 2024
Funding Finish 2026
GNo G2401556
Type Of Funding C3100 – Aust For Profit
Category 3100
UON Y

20222 grants / $789,673

Effects of environmental heat stress on male fertility in livestock species$488,409

Funding body: ARC (Australian Research Council)

Funding body ARC (Australian Research Council)
Project Team Doctor Aleona Swegen, Mrs Narantsatsral Sandagdorj
Scheme Discovery Early Career Researcher Award (DECRA)
Role Lead
Funding Start 2022
Funding Finish 2024
GNo G2001143
Type Of Funding C1200 - Aust Competitive - ARC
Category 1200
UON Y

Reducing the Effects of Heat Stress and Ageing on Sperm DNA damage in Thoroughbred Stallions$301,264

Funding body: AgriFutures Australia

Funding body AgriFutures Australia
Project Team Associate Professor Zamira Gibb, Professor Mark Baker, Associate Professor Geoffry De Iuliis, Doctor Roisin Griffin, Doctor Aleona Swegen
Scheme Thoroughbred Horse Program
Role Investigator
Funding Start 2022
Funding Finish 2024
GNo G2101310
Type Of Funding C1400 - Aust Competitive - Commonwealth Rural R&D
Category 1400
UON Y

20194 grants / $1,223,728

Proteomic and genetic analysis of subfertile bull spermatozoa$497,172

Funding body: ARC (Australian Research Council)

Funding body ARC (Australian Research Council)
Project Team Professor Mark Baker, Distinguished Emeritus Professor John Aitken, Professor Rodney Scott, Associate Professor Zamira Gibb, Doctor Aleona Swegen
Scheme Discovery Projects
Role Investigator
Funding Start 2019
Funding Finish 2021
GNo G1800149
Type Of Funding Not Known
Category UNKN
UON Y

Developing a novel diagnostic test for early pregnancy in the mare$371,183

Funding body: AgriFutures Australia

Funding body AgriFutures Australia
Project Team Doctor Aleona Swegen, Associate Professor Zamira Gibb, Professor Mark Baker, Distinguished Emeritus Professor John Aitken
Scheme Thoroughbred Horse Program
Role Lead
Funding Start 2019
Funding Finish 2022
GNo G1900240
Type Of Funding C1400 - Aust Competitive - Commonwealth Rural R&D
Category 1400
UON Y

A Novel Device for the On-farm Assessment of Stallion Sperm Fertility$300,503

Funding body: AgriFutures Australia

Funding body AgriFutures Australia
Project Team Associate Professor Zamira Gibb, Associate Professor Zamira Gibb, Doctor Aleona Swegen, Distinguished Emeritus Professor John Aitken
Scheme Thoroughbred Horse Program
Role Investigator
Funding Start 2019
Funding Finish 2022
GNo G1900072
Type Of Funding C1400 - Aust Competitive - Commonwealth Rural R&D
Category 1400
UON Y

IVOS II-Animal-basic for computer assisted analysis of sperm from multiple species$54,870

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Mark Baker, Associate Professor Zamira Gibb, Doctor Aleona Swegen, Associate Professor Geoffry De Iuliis, Mr BENJAMIN Curry
Scheme Equipment Grant
Role Investigator
Funding Start 2019
Funding Finish 2019
GNo G1900305
Type Of Funding Scheme excluded from IGS
Category EXCL
UON Y

20181 grants / $64,000

Understanding and reducing the effects of heat stress on TB stallion fertility$64,000

Funding body: AgriFutures Australia

Funding body AgriFutures Australia
Project Team Doctor Aleona Swegen, Distinguished Emeritus Professor John Aitken, Associate Professor Zamira Gibb, Miss Roisin Griffin
Scheme Research and Development Project
Role Lead
Funding Start 2018
Funding Finish 2020
GNo G1800456
Type Of Funding C1400 - Aust Competitive - Commonwealth Rural R&D
Category 1400
UON Y
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Research Supervision

Number of supervisions

Completed4
Current4

Current Supervision

Commenced Level of Study Research Title Program Supervisor Type
2024 PhD Cellular and Molecular Consequences of Heat-Induced Subfertility in Stallions: from Spermatogenesis to the Offspring PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Principal Supervisor
2023 PhD Integrated Analysis of DNA Damage in Equine Sperm and Oocytes: Implications for Assisted Reproduction and Embryonic Development PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
2023 PhD Ambient Heat Stress in the Stallion and its Effects on Spermatogenesis, Endocrinology and Systemic Oxidative Stress PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Principal Supervisor
2022 Masters An Investigation into the Effects of Oxidative DNA Damage on Stallion Fertility and Subsequent Progeny Performance. M Philosophy (Biological Sc), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor

Past Supervision

Year Level of Study Research Title Program Supervisor Type
2024 PhD Development of a Novel Medium for Storing Bull Spermatozoa at Room Temperature PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
2024 PhD Multiomics Approach towards Identifying Plasma Biomarkers for Early Pregnancy Diagnosis in Mares PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Principal Supervisor
2023 PhD An Investigation into the Equine Peri-Conception Period: Utilising emerging biotechnologies to investigate the mechanisms of reproduction and early pregnancy in the mare PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
2021 PhD Molecular Mechanisms Governing Fertility Maintenance in Thoroughbred Stallions PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle Co-Supervisor
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News

Frances Kay, Dr Aleona Swegen, Paul Juergens

News • 29 Aug 2025

Dr Aleona Swegen named inaugural winner of $200,000 Newcastle Permanent Innovation Accelerator Program

Hunter Medical Research Institute (HMRI), in partnership with Newcastle Permanent, has named Dr Aleona Swegen from the University of Newcastle as the inaugural winner of the Newcastle Permanent Innovation Accelerator Program. She has been awarded $200,000 to fast-track the commercialisation of her groundbreaking fertility technology, SpermSafe.

Accelerator program Innovators

News • 22 May 2025

First researchers announced for accelerator program tackling sepsis, stroke, IVF and hearing

The Hunter Medical Research Institute (HMRI) has announced the first group of innovators selected for the Newcastle Permanent Innovation Accelerator Program, with projects aimed at faster sepsis detection, safer stroke treatment, improving IVF success, and monitoring hearing through everyday visual behaviour.

News • 17 Aug 2021

Funding success supports early career research translate to real-world

Five outstanding early career researchers have been successful in securing more than $2 million in the Australian Research Council’s Discovery Early Career Researcher Award (DECRA) scheme.

Dr Aleona Swegen

Position

ARC DECRA FELLOW
School of Environmental and Life Sciences
College of Engineering, Science and Environment

Contact Details

Email aleona.swegen@newcastle.edu.au
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