Dr  Yuchen Feng

Dr Yuchen Feng

Cancer Institute NSW Early Career Fellow

School of Medicine and Public Health

Career Summary

Biography

Yuchen Feng obtained a Bachelor degree in medicine from China in 2016 before moving to the University of Newcastle, Australia, where she obtained a PhD degree in medical biochemistry in 2021. During her PhD, she discovered, for the first time, the proto-oncoprotein c-Myc inactivates the tumor suppressor p53 in cancer cells through a pan-cancer upregulated long noncoding RNA MILIP, which drives cancer pathogenesis. This work was published in Nature Communications in 2020 with Yuchen Feng as a leading author. Moreover, this work was presented at both national and international conferences including an oral presentation in American Association for Cancer Research (AACR) Annual Meeting, and won several awards.

Dr Feng is currently a postdoctoral researcher at the University of Newcastle. Her research has focused on mechanisms of long noncoding RNAs in cancer and extended these investigations to potential clinical applications such as exploring lncRNAs as diagnostic biomarkers and therapeutic targets. She is familiar with a wide range of advanced technologies including high-throughput RNA-sequencing, TCGA data analysis and proteomics, and has employed these knowledge to her research work.


Qualifications

  • Doctor of Philosophy, University of Newcastle
  • Bachelor of Medicine, China Medical University - China

Keywords

  • RNA therapy
  • cancer biology
  • long non-coding RNA

Languages

  • English (Fluent)
  • Mandarin (Mother)

Fields of Research

Code Description Percentage
321101 Cancer cell biology 50
321104 Cancer therapy (excl. chemotherapy and radiation therapy) 50

Professional Experience

UON Appointment

Title Organisation / Department
Cancer Institute NSW Early Career Fellow University of Newcastle
School of Medicine and Public Health
Australia

Awards

Award

Year Award
2021 Best New Publication Award
School of Medicine and Public Health, The University of Newcastle
2021 Publication of Prestige Award
School of Biomedical Sciences and Pharmcy, The University of Newcastle
2021 2021 AACBS Research Excellence Award
Australian Association of Chinese Biomedical Scientists (AACBS)
2021 2021 College of Health, Medicine and Wellbeing Staff Awards (Early- and Mid-Career Research)
College of Health, Medicine & Wellbeing - The University of Newcastle
2020 HDR Publication Award 2020
Faculty of Health and Medicine, The University of Newcastle
2020 Best Oral Presentation
Australian Association of Chinese Biomedical Scientists
2018 Best Oral Presentation
Australian Association of Chinese Biomedical Scientists
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Publications

For publications that are currently unpublished or in-press, details are shown in italics.


Journal article (14 outputs)

Year Citation Altmetrics Link
2024 Zheng SM, Feng YC, Zhu Q, Li RQ, Yan QQ, Teng L, et al., 'MILIP Binding to tRNAs Promotes Protein Synthesis to Drive Triple-Negative Breast Cancer.', Cancer Res, OF1-OF15 (2024)
DOI 10.1158/0008-5472.CAN-23-3046
Co-authors Lei Jin, Xu Zhang, Xiaohong Zhao, Mark Baker
2023 La T, Chen S, Zhao XH, Zhou S, Xu R, Teng L, et al., 'LncRNA LIMp27 Regulates the DNA Damage Response through p27 in p53-Defective Cancer Cells.', Adv Sci (Weinh), 10 e2204599 (2023) [C1]
DOI 10.1002/advs.202204599
Citations Scopus - 2
Co-authors Muhammad Jamaluddin, Yuanyuan Zhang, Xu Zhang, Lei Jin, Xiaohong Zhao
2022 Li D, Hu LN, Zheng SM, La T, Wei LY, Zhang XJ, et al., 'High nerve density in breast cancer is associated with poor patient outcome', FASEB BioAdvances, 4 391-401 (2022) [C1]

Active crosstalk between the nervous system and breast cancer cells has been experimentally demonstrated in vitro and in animal models. However, low frequencies of peripheral nerv... [more]

Active crosstalk between the nervous system and breast cancer cells has been experimentally demonstrated in vitro and in animal models. However, low frequencies of peripheral nerve presence in human breast cancers reported in previous studies (~30% of cases) potentially negate a major role of the nervous system in breast cancer development and progression. This study aimed to clarify the incidence of nerves within human breast cancers and to delineate associations with clinicopathological features. Immunohistochemical staining was conducted in formalin-fixed paraffin-embedded breast cancer tissue sections using antibodies against the pan-neuronal markers protein gene product 9.5 and growth-associated protein 43, and the sympathetic nerve-specific marker tyrosine hydroxylase. Nerve trunks and isolated nerve fibers were quantitated. The chi-squared test was used to determine the associations between nerve counts and clinicopathological parameters. The log-rank test was used to compare differences in patient progression-free survival (PFS) and overall survival (OS). The overall frequency of peripheral nerves in breast cancers was 85%, a markedly higher proportion than reported previously. Of note, most nerves present in breast cancers were of the sympathetic origin. While high density of nerve trunks or isolated nerve fibers was associated with poor PFS and OS of patients, high nerve trunk density appeared also to predict poor patient PFS independently of lymph node metastasis. Innervation of breast cancers is a common event correlated with poor patient outcomes. These findings support the notion that the nervous system plays an active role in breast cancer pathogenesis.

DOI 10.1096/fba.2021-00147
Citations Scopus - 5Web of Science - 5
Co-authors Xu Zhang, Hubert Hondermarck
2022 Gao H, Kan S, Ye Z, Feng Y, Jin L, Zhang X, et al., 'Development of in silico methodology for siRNA lipid nanoparticle formulations', Chemical Engineering Journal, 442 (2022) [C1]
DOI 10.1016/j.cej.2022.136310
Citations Scopus - 5Web of Science - 4
Co-authors Lei Jin, Roger Liang, Xu Zhang
2022 Wang Y, Feng YC, Gan Y, Teng L, Wang L, La T, et al., 'LncRNA MILIP links YBX1 to translational activation of Snai1 and promotes metastasis in clear cell renal cell carcinoma', JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH, 41 (2022) [C1]
DOI 10.1186/s13046-022-02452-9
Citations Scopus - 15Web of Science - 1
Co-authors Xu Zhang
2022 Wang PL, Teng L, Feng YC, Yue YM, Han MM, Yan Q, et al., 'The N-Myc-responsive lncRNA MILIP promotes DNA double-strand break repair through non-homologous end joining', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119 (2022) [C1]
DOI 10.1073/pnas.2208904119
Citations Scopus - 3Web of Science - 1
Co-authors Xiaohong Zhao, Xu Zhang, Yuanyuan Zhang, Lei Jin
2021 Teng L, Feng YC, Guo ST, Wang PL, Qi TF, Yue YM, et al., 'The pan-cancer lncRNA PLANE regulates an alternative splicing program to promote cancer pathogenesis', NATURE COMMUNICATIONS, 12 (2021) [C1]
DOI 10.1038/s41467-021-24099-4
Citations Scopus - 29Web of Science - 18
Co-authors Xu Zhang, Lei Jin, Yuanyuan Zhang, Xiaohong Zhao
2021 La T, Chen S, Guo T, Zhao XH, Teng L, Li D, et al., 'Visualization of endogenous p27 and Ki67 reveals the importance of a c-Myc-driven metabolic switch in promoting survival of quiescent cancer cells', THERANOSTICS, 11 9605-9622 (2021) [C1]
DOI 10.7150/thno.63763
Citations Scopus - 12Web of Science - 9
Co-authors Xiaohong Zhao, Alexandra Brown, Lei Jin, Xu Zhang, Yuanyuan Zhang
2021 Feng YC, Zhao XH, Teng L, Thorne RF, Jin L, Zhang XD, 'The pan-cancer lncRNA MILIP links c-Myc to p53 repression', MOLECULAR & CELLULAR ONCOLOGY, 8 (2021)
DOI 10.1080/23723556.2020.1842714
Citations Scopus - 2
Co-authors Lei Jin, Xiaohong Zhao, Xu Zhang
2020 Feng YC, Liu XY, Teng L, Ji Q, Wu Y, Li JM, et al., 'c-Myc inactivation of p53 through the pan-cancer lncRNA MILIP drives cancer pathogenesis', Nature Communications, 11 (2020) [C1]
DOI 10.1038/s41467-020-18735-8
Citations Scopus - 66Web of Science - 32
Co-authors Yuanyuan Zhang, Xu Zhang, Muhammad Jamaluddin, Rodney Scott, Lei Jin
2020 La T, Jin L, Liu XY, Song ZH, Farrelly M, Feng YC, et al., 'Cylindromatosis is required for survival of a subset of melanoma cells.', Oncology Research, 28 385-398 (2020) [C1]
DOI 10.3727/096504020x15861709922491
Citations Scopus - 3Web of Science - 3
Co-authors Yuanyuan Zhang, Xu Zhang, Lei Jin
2019 Yari H, Jin L, Teng L, Wang Y, Wu Y, Liu GZ, et al., 'LncRNA REG1CP promotes tumorigenesis through an enhancer complex to recruit FANCJ helicase for REG3A transcription', NATURE COMMUNICATIONS, 10 (2019) [C1]
DOI 10.1038/s41467-019-13313-z
Citations Scopus - 38Web of Science - 36
Co-authors Yuanyuan Zhang, Lei Jin, Xu Zhang, Rodney Scott
2018 La T, Liu GZ, Farrelly M, Cole N, Feng YC, Zhang YY, et al., 'A p53-responsive miRNA network promotes cancer cell quiescence', Cancer Research, 78 6666-6679 (2018) [C1]

Cancer cells in quiescence (G0 phase) are resistant to death, and re-entry of quiescent cancer cells into the cell-cycle plays an important role in cancer recurrence. Here we show... [more]

Cancer cells in quiescence (G0 phase) are resistant to death, and re-entry of quiescent cancer cells into the cell-cycle plays an important role in cancer recurrence. Here we show that two p53-responsive miRNAs utilize distinct but complementary mechanisms to promote cancer cell quiescence by facilitating stabilization of p27. Purified quiescent B16 mouse melanoma cells expressed higher levels of miRNA-27b-3p and miRNA-455-3p relative to their proliferating counterparts. Induction of quiescence resulted in increased levels of these miRNAs in diverse types of human cancer cell lines. Inhibition of miRNA-27b-3p or miRNA-455-3p reduced, whereas its overexpression increased, the proportion of quiescent cells in the population, indicating that these miRNAs promote cancer cell quiescence. Accordingly, cancer xenografts bearing miRNA-27b-3p or miRNA-455-3p mimics were retarded in growth. miRNA-27b-3p targeted cyclin-dependent kinase regulatory subunit 1 (CKS1B), leading to reduction in p27 polyubiquitination mediated by S-phase kinase-associated protein 2 (Skp2). miRNA-455-3p targeted CDK2-associated cullin domain 1 (CAC1), which enhanced CDK2-mediated phosphorylation of p27 necessary for its polyubiquitination. Of note, the gene encoding miRNA-27b-3p was embedded in the intron of the chromosome 9 open reading frame 3 gene that was transcriptionally activated by p53. Similarly, the host gene of miRNA-455-3p, collagen alpha-1 (XXVII) chain, was also a p53 transcriptional target. Collectively, our results identify miRNA-27b-3p and miRNA-455-3p as important regulators of cancer cell quiescence in response to p53 and suggest that manipulating miRNA-27b-3p and miRNA-455-3p may constitute novel therapeutic avenues for improving outcomes of cancer treatment. Significance: Two novel p53-responsive microRNAs whose distinct mechanisms of action both stabilize p27 to promote cell quiescence and may serve as therapeutic avenues for improving outcomes of cancer treatment.

DOI 10.1158/0008-5472.CAN-18-1886
Citations Scopus - 21Web of Science - 17
Co-authors Yuanyuan Zhang, Xu Zhang, Lei Jin
2017 Wang JY, Liu GZ, Wilmott JS, La T, Feng YC, Yari H, et al., 'Skp2-mediated stabilization of MTH1 promotes survival of melanoma cells upon oxidative stress', Cancer Research, 77 6226-6239 (2017) [C1]

MTH1 helps prevent misincorporation of ROS-damaged dNTPs into genomic DNA; however, there is little understanding of how MTH1 itself is regulated. Here, we report that MTH1 is reg... [more]

MTH1 helps prevent misincorporation of ROS-damaged dNTPs into genomic DNA; however, there is little understanding of how MTH1 itself is regulated. Here, we report that MTH1 is regulated by polyubiquitination mediated by the E3 ligase Skp2. In melanoma cells, MTH1 was upregulated commonly mainly due to its improved stability caused by K63-linked polyubiquitination. Although Skp2 along with other components of the Skp1-Cullin-F-box (SCF) ubiquitin ligase complex was physically associated with MTH1, blocking the SCF function ablated MTH1 ubiquitination and expression. Conversely, overexpressing Skp2-elevated levels of MTH1 associated with an increase in its K63-linked ubiquitination. In melanoma cell lines and patient specimens, we observed a positive correlation of Skp2 and MTH1 expression. Mechanistic investigations showed that Skp2 limited DNA damage and apoptosis triggered by oxidative stress and that MAPK upregulated Skp2 and MTH1 to render cells more resistant to such stress. Collectively, our findings identify Skp2-mediated K63-linked polyubiquitination as a critical regulatory mechanism responsible for MTH1 upregulation in melanoma, with potential implications to target the MAPK/Skp2/MTH1 pathway to improve its treatment.

DOI 10.1158/0008-5472.CAN-17-1965
Citations Scopus - 38Web of Science - 32
Co-authors Lei Jin, Xu Zhang
Show 11 more journal articles

Conference (13 outputs)

Year Citation Altmetrics Link
2023 Zhao X, Zhang YY, Xu L, La T, Feng YC, Tang HJ, et al., 'Disruption of nucleotide homeostasis confers cancer cell susceptibility to oxidative phosphorylation inhibition independently of energy depletion', CANCER RESEARCH, FL, Orlando (2023)
DOI 10.1158/1538-7445.AM2023-3687
Co-authors Mark Baker, Xu Zhang, Yuanyuan Zhang
2023 La T, Chen S, Zhao XH, Zhang YY, Feng YC, Zhang XD, Jin L, 'lncRNA LIMp27 promotes p53-defective cancer pathogenesis', CANCER RESEARCH, FL, Orlando (2023)
DOI 10.1158/1538-7445.AM2023-3798
Co-authors Yuanyuan Zhang, Xu Zhang
2020 Teng L, Feng YC, La T, Zhang YY, Zhao XH, Sokulsky L, et al., 'LncRNA PLANE regulates NCOR2 alternative splicing and promotes tumorigenesis', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2020)
Co-authors Yuanyuan Zhang, Lei Jin, Xu Zhang, Xiaohong Zhao
2020 La T, Zhao XH, Zhang YY, Feng YC, Yan XG, Sokulsky L, et al., 'Visualization of endogenous p27 and Ki67 reveals an IDH3-mediated metabolic switch toward oxidative phosphorylation in quiescent cells', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2020)
Co-authors Yuanyuan Zhang, Xiaohong Zhao, Xu Zhang
2020 Zhao XH, La T, Feng YC, Zhang YY, Yan XG, Sokulsky L, et al., 'Targeting oxidative phosphorylation for cancer treatment in colorectal cancer', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2020)
Co-authors Yuanyuan Zhang, Xiaohong Zhao, Xu Zhang
2020 Feng YC, Zhang YY, La T, Tabatabaee H, Zhao X, Yan XG, et al., 'c-Myc inactivation of p53 through the pan-cancer lncRNA MILIP drives cancer pathogenesis', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2020)
Co-authors Xiaohong Zhao, Yuanyuan Zhang, Xu Zhang
2019 La T, Farrelly M, Cole N, Carnell M, Feng YC, Yan XG, et al., 'Visualization of Endogenous p27 and Ki67 Reveals Oxidative Phosphorylation-Dependent Survival ofQuiescent Cells', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2019)
Co-authors Xu Zhang, Yuanyuan Zhang
2019 Zhang YY, Ben S, La T, Feng YC, Tabataba H, Zhang LS, et al., 'Regulatory Roles of the lncRNA OVAAL on Cancer Cell Survival and Cellular Senescence', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2019)
Citations Web of Science - 1
Co-authors Xu Zhang, Yuanyuan Zhang
2019 Feng YC, Liu XY, Teng L, Wu Y, Ji Q, Gao W, et al., 'MILIP is a Pan Cancer-Associated Long Noncoding RNA that Links MYC to Inactivation of p53', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2019)
Co-authors Yuanyuan Zhang, Xu Zhang
2018 Tabatabaee H, Yari H, Feng Y, Zhang YY, La T, Lei J, Zhang XD, 'The Role of Ion Channels in Melanoma', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2018)
Co-authors Xu Zhang, Yuanyuan Zhang
2018 Feng Y, Zhang XD, Jin L, Zhang YY, Yari H, La T, Tabatabaee H, 'Oncogenic upregulation of the long noncoding RNA5', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY (2018)
Co-authors Yuanyuan Zhang, Xu Zhang, Lei Jin
2018 Zhang YY, Yan XG, Farrelly M, Yari H, Feng Y, La T, et al., 'Long noncoding RNA OVAAL promotes melanoma cell proliferation through translational suppression of p27', CANCER RESEARCH, Chicago, IL (2018)
DOI 10.1158/1538-7445.AM2018-2451
Citations Web of Science - 1
Co-authors Lei Jin, Xu Zhang
2017 Jin L, Tabatabaeehatambakhsh H, Jiang CC, Yan XG, Wang JY, Zhang YY, et al., 'ACTN4 stabilises RIPK1 to function as an oncogenic driver in melanoma', CANCER RESEARCH, Washington, DC (2017)
DOI 10.1158/1538-7445.AM2017-4462
Co-authors Xu Zhang, Lei Jin, Chenchen Jiang
Show 10 more conferences
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Grants and Funding

Summary

Number of grants 7
Total funding $1,426,359

Click on a grant title below to expand the full details for that specific grant.


20241 grants / $579,632

Exploiting long noncoding RNAs for lung cancer diagnosis and treatment$579,632

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Doctor Yuchen Feng, Doctor Yuchen Feng
Scheme Investigator Grant
Role Lead
Funding Start 2024
Funding Finish 2028
GNo G2300202
Type Of Funding C1100 - Aust Competitive - NHMRC
Category 1100
UON Y

20231 grants / $99,830

Harnessing long noncoding RNAs for colorectal cancer early diagnosis and treatment$99,830

Funding body: Cure Cancer Australia Foundation

Funding body Cure Cancer Australia Foundation
Project Team Doctor Yuchen Feng, Conjoint Associate Professor Fiona Day, Associate Professor Lei Jin, Doctor Roger Liang, Professor Rodney Scott, Professor Xu Dong Zhang
Scheme Research Grant
Role Lead
Funding Start 2023
Funding Finish 2023
GNo G2200777
Type Of Funding C1700 - Aust Competitive - Other
Category 1700
UON Y

20223 grants / $704,897

Exploring long noncoding RNA vulnerabilities of metabolism for cancer treatment$597,930

Funding body: Cancer Institute NSW

Funding body Cancer Institute NSW
Project Team Doctor Yuchen Feng
Scheme Early Career Fellowship
Role Lead
Funding Start 2022
Funding Finish 2025
GNo G2100835
Type Of Funding C2300 – Aust StateTerritoryLocal – Own Purpose
Category 2300
UON Y

Identifying and destroying hidden devils for cancer treatment$101,967

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Doctor Yuchen Feng, Doctor Stan Kan, Doctor Ting La, Dr LEON Sokulsky, Doctor Yuanyuan Zhang
Scheme Research Grant
Role Lead
Funding Start 2022
Funding Finish 2024
GNo G2200123
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

Cutting off the bio-building block supply to cancer$5,000

Funding body: 2022 College of Health, Medicine and Wellbeing Strategic Research Pilot Grant

Funding body 2022 College of Health, Medicine and Wellbeing Strategic Research Pilot Grant
Scheme 2022 College of Health, Medicine and Wellbeing Strategic Research Pilot Grant
Role Investigator
Funding Start 2022
Funding Finish 2022
GNo
Type Of Funding Internal
Category INTE
UON N

20212 grants / $42,000

Career Development Grant$27,000

Funding body: School of Medicine and Public Health, The University of Newcastle

Funding body School of Medicine and Public Health, The University of Newcastle
Scheme SMPH Small Grant Round
Role Lead
Funding Start 2021
Funding Finish 2021
GNo
Type Of Funding Internal
Category INTE
UON N

Exploring RNA therapeutics for cancer treatment: targeting lncRNAs using siRNA-based nanoparticles$15,000

Funding body: 2021 College of Health, Medicine and Wellbeing Strategic Research Pilot Grant

Funding body 2021 College of Health, Medicine and Wellbeing Strategic Research Pilot Grant
Scheme 2021 College of Health, Medicine and Wellbeing Strategic Research Pilot Grant
Role Lead
Funding Start 2021
Funding Finish 2021
GNo
Type Of Funding Internal
Category INTE
UON N
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News

Research lab

News • 15 Dec 2023

$10.3m NHMRC Investigator grants help search for health solutions

Six University of Newcastle researchers have been awarded more than $10.3m in National Health and Medical Research Council (NHMRC) Investigator grants* to tackle health problems such as pre-term labour, schizophrenia, endometrial and lung cancers, as well as asthma.

Cancer research

News • 15 Dec 2021

Researchers on mission to improve cancer outcomes

Three University of Newcastle researchers have been awarded 2022 Early Career Fellowships by the Cancer Institute NSW. Dr Rebecca Wyse, Dr Yuchen Feng and Dr Heather Murray will each receive a $600,000 scholarship to advance projects designed to improve treatment and outcomes for cancer patients.

Dr Yuchen Feng

Position

Cancer Institute NSW Early Career Fellow
Melanoma Research Laboratory
School of Medicine and Public Health
College of Health, Medicine and Wellbeing

Contact Details

Email yuchen.feng@newcastle.edu.au
Phone (02) 49138343
Mobile 0414546659

Office

Room Life Sciences Building Room LS2-04
Building Life Sciences Building
Location Callaghan
University Drive
Callaghan, NSW 2308
Australia
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