Highlighted Publications

Year	Citation	Nova
2005	Berretta Regina Esther, Franca P M, Armentano V A, 'Metaheuristic approaches for the multilevel resource-constrained lot-sizing problem with setup and lead times', Asia-Pacific Journal of Operational Research, 22 261-286 (2005) [C1]
2005	Moscato Pablo Alberto, Berretta Regina Esther, Hourani Mou'Ath Adeib, Mendes Alexandre De Sousa, Cotta Carlos, 'Genes related with Alzheimer's disease: A comparison of evolutionary search, statistical and integer programming approaches', Applications on Evolutionary Computing: EvoWorkkshops 2005: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoMUSART, and EvoSTOC, Lausanne, Switzerland (2005) [E1]
2005	Moscato Pablo Alberto, Mathieson Luke, Mendes Alexandre De Sousa, Berretta Regina Esther, 'The Electronic Primaries: Predicting the U.S. Presidency Using Feature Selection with Safe Data Reduction', Proceedings of the twenty eighth Australasian Computer Science Conference (ACSC 2005) Newcastle, Australia, January, 2005, Newcastle, N.S.W (2005) [E1]
2004	Berretta Regina Esther, Luiz Fernando Rodrigues, 'A memetic algorithm for a multistage capacitated lot-sizing problem', International journal of production economics, 87 67-81 (2004) [C1]

Publications

For items published while at an institution other that the University of Newcastle, details are shown in italics.

Click on a category title below to expand the list of citations for that specific category.

Chapters In A Book (6 outputs)

Chapter in A1 Book (B1) (6 outputs)

Year	Citation	Nova
2012	Berretta Regina Esther, Cotta Carlos, Moscato Pablo Alberto, 'Memetic algorithms in bioinformatics', Handbook of Memetic Algorithms, Springer, Berlin, Germany, 261-271 (2012) [B1]
2009	Ravetti Martin Gomez, Berretta Regina Esther, Moscato Pablo Alberto, 'Novel biomarkers for prostate cancer revealed by ([alpha, beta]) -k-feature sets', Foundations of Computational Intelligence Volume 5: Functional Approximation and Classification, Springer, Berlin, 149-175 (2009) [B1]
2008	Berretta Regina Esther, Costa Wagner Emanoel, Moscato Pablo Alberto, 'Combinatorial optimization models for finding genetic signatures from gene expression datasets', Bioinformatics, Humana Press, New York, 363-377 (2008) [B1]
2008	Hourani Mou'Ath Adeib, Berretta Regina Esther, Mendes Alexandre De Sousa, Moscato Pablo Alberto, 'Genetic signatures for a rodent model of Parkinson's disease using combinatorial optimization methods', Bioinformatics, Humana Press, New York, 379-392 (2008) [B1]
2004	Berretta Regina Esther, Carlos Cotta, Moscato Pablo Alberto, 'Enhancing the performance of memetic algorithms by using a matching-based recombination algorithm', Metaheuristics: Computer Decision-Making, Kluwer Academic Publishers, The Netherlands, 719 (2004) [B1]
2003	Berretta Regina Esther, Carlos Cotta, Moscato Pablo Alberto, 'Enhancing the performance of Memetic Algorithms by using a Matching-Based Recombination Algorithm', Maetaheuristics: Computer Decision Making, Kluwer Academic Publishers, Dordrecht, The Netherlands, 65-90 (2003) [B1]

Journal Articles (14 outputs)

Refereed Article in a Scholarly Journal (C1) (14 outputs)

Year	Citation	Nova
2012	Arefin Ahmed Shamsul, Mathieson Luke, Johnstone Daniel McKenzie, Berretta Regina Esther, Moscato Pablo Alberto, 'Unveiling clusters of RNA transcript pairs associated with markers of Alzheimer's disease progression', PLOS One, 7 1-25 (2012) [C1]
2012	Arefin Ahmed Shamsul, Riveros Ricardo Carlos, Berretta Regina Esther, Moscato Pablo Alberto, 'GPU-FS-kNN: A software tool for fast and scalable kNN computation using GPUs', PLOS One, 7 e44000 (2012) [C1]
2012	Johnstone Daniel McKenzie, Milward Adrienne Elizabeth, Berretta Regina Esther, Moscato Pablo Alberto, 'Multivariate protein signatures of pre-clinical Alzheimer's disease in the Alzheimer's disease meuroimaging initiative (ADNI) plasma proteome dataset', PLoS One, 7 e34341 (2012) [C1]
2011	Inostroza-Ponta Mario, Berretta Regina Esther, Moscato Pablo Alberto, 'QAPgrid: A two level QAP-based approach for large-scale data analysis and visualization', PLoS ONE, 6 e14468 (2011) [C1]
2011	Rocha De Paula Mateus, Gomez Ravetti Martin, Berretta Regina Esther, Moscato Pablo Alberto, 'Differences in abundances of cell-signalling proteins in blood reveal novel biomarkers for early detection of clinical alzheimer's disease', PLoS ONE, 6 e17481 (2011) [C1]
2010	Berretta Regina Esther, Moscato Pablo Alberto, 'Cancer biomarker discovery: The entropic hallmark', Plos One, 5 e12262 (2010) [C1]
2010	Ravetti Martin Gomez, Rosso Osvaldo Anibal, Berretta Regina Esther, Moscato Pablo Alberto, 'Uncovering molecular biomarkers that correlate cognitive decline with the changes of hippocampus' gene expression profiles in Alzheimer's disease', Plos One, 5 1-42 (2010) [C1]
2010	Riveros Ricardo Carlos, Mellor Drew, Gandhi Kaushal S, McKay Fiona C, Cox Mathew Brian, Berretta Regina Esther, Vaezpour Seyed Yahya, Inostroza-Ponta Mario, Broadley Simon A, Heard Robert N, Vucic Stephen, Stewart Graeme J, Williams David Bruce, Scott Rodney, Lechner-Scott Jeannette, Booth David R, Moscato Pablo Alberto, Anzgene Multiple Sclerosis Genetic, 'A transcription factor map as revealed by a genome-wide gene expression analysis of whole-blood mRNA transcriptome in multiple sclerosis', Plos One, 5 1-28 (2010) [C1]
2009	Rosso Osvaldo Anibal, Mendes Alexandre De Sousa, Berretta Regina Esther, Rostas John Andrew, Hunter Michael, Moscato Pablo Alberto, 'Distinguishing childhood absence epilepsy patients from controls by the analysis of their background brain electrical activity (II): A combinatorial optimization approach for electrode selection', Journal of Neuroscience Methods, 181 257-267 (2009) [C1]
2007	Berretta Regina Esther, Mendes Alexandre De Sousa, Moscato Pablo Alberto, 'Selection of discriminative genes in microarray experiments using mathematical programming', Journal of Research and Practice in Information Technology, 39 287-299 (2007) [C1]
2007	De Oliveira L K, Berretta Regina Esther, 'An approach based on langranian relaxation and the taboo search for the multi-stage lot sizing problem', GEPROS: Gestao da Producao, Operacoes e Sistemas, 4 77-93 (2007) [C1]
2007	Moscato Pablo Alberto, Mendes Alexandre De Sousa, Berretta Regina Esther, 'Benchmarking a Memetic Algorithm for Ordering Microarray Data', Biosystems, 88 56-75 (2007) [C1]
2005	Berretta Regina Esther, Franca P M, Armentano V A, 'Metaheuristic approaches for the multilevel resource-constrained lot-sizing problem with setup and lead times', Asia-Pacific Journal of Operational Research, 22 261-286 (2005) [C1]
2004	Berretta Regina Esther, Luiz Fernando Rodrigues, 'A memetic algorithm for a multistage capacitated lot-sizing problem', International journal of production economics, 87 67-81 (2004) [C1]

Review (1 outputs)

A Substantial Review of an Entire Field of Study (D1) (1 outputs)

Conference Publication (17 outputs)

Full Written Paper - Refereed (E1) (12 outputs)

Year	Citation	Nova
2012	Arefin Ahmed Shamsul, Riveros Ricardo Carlos, Berretta Regina Esther, Moscato Pablo Alberto, 'Computing large-scale distance matrices on GPU', Proceedings of 2012 7th International Conference on Computer Science & Education, Melbourne (2012) [E1]
2012	Arefin Ahmed Shamsul, Riveros Ricardo Carlos, Berretta Regina Esther, Moscato Pablo Alberto, 'kNN-Boruvka-GPU: A fast and scalable MST construction from kNN graphs on GPU', Lecture Notes in Computer Science, Salvador de Bahia, Brazil (2012) [E1]
2012	Arefin Ahmed Shamsul, Riveros Ricardo Carlos, Berretta Regina Esther, Moscato Pablo Alberto, 'kNN-MST-Agglomerative: A fast and scalable graph-based data clustering approach on GPU', Proceedings of 2012 7th International Conference on Computer Science & Education, Melbourne (2012) [E1]
2011	Arefin Ahmed Shamsul, Inostroza-Ponta Mario, Mathieson Luke, Berretta Regina Esther, Moscato Pablo Alberto, 'Clustering nodes in large-scale biological networks using external memory algorithms', Algorithms and Architectures for Parallel Processing, Melbourne, Australia (2011) [E1]
2009	Berretta Regina Esther, Giggins Helen Patricia, 'Online support material for computer science honours program using Blackboard', Proceedings 2009 2nd IEEE International Conference on Computer Science and Information Technology, Beijing, China (2009) [E1]
2007	Hourani Mou'Ath Adeib, Mendes Alexandre De Sousa, Berretta Regina Esther, Moscato Pablo Alberto, 'Genetic biomarkers for brain hemisphere differentiation in Parkinson's Disease', Computational Models for Life Sciences (CMLS '07): 2007 International Symposium. Conference Proceedings, Gold Coast, QLD (2007) [E1]
2007	Inostroza-Ponta Mario, Mendes Alexandre De Sousa, Berretta Regina Esther, Moscato Pablo Alberto, 'An integrated QAP-based approach to visualize patterns of gene expression similarity', Progress in Artificial Life, Gold Coast, QLD (2007) [E1]
2007	Tuga Mauritsius, Berretta Regina Esther, Mendes Alexandre De Sousa, 'A hybrid simulated annealing with kempe chain neighborhood for the university timetabling problem', Proceedings of the 6th IEEE/ACIS International Conference on Computer and Information Science, Melbourne (2007) [E1]
2006	Inostroza-Ponta Mario, Berretta Regina Esther, Mendes Alexandre De Sousa, Moscato Pablo Alberto, 'An automatic graph layout procedure to visualize correlated data', Artificial Intelligence in Theory and Practice, Santiago, Chile (2006) [E1]
2005	Berretta Regina Esther, Mendes Alexandre De Sousa, Moscato Pablo Alberto, 'Integer Programming Models and Algorithms for Molecular Classification of Cancer from Microarray Data', Proceedings of the twenty eighth Australasian Computer Science Conference (ACSC 2005) Newcastle, Australia, January, 2005, Newcastle, N.S.W (2005) [E1]
2005	Moscato Pablo Alberto, Berretta Regina Esther, Hourani Mou'Ath Adeib, Mendes Alexandre De Sousa, Cotta Carlos, 'Genes related with Alzheimer's disease: A comparison of evolutionary search, statistical and integer programming approaches', Applications on Evolutionary Computing: EvoWorkkshops 2005: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoMUSART, and EvoSTOC, Lausanne, Switzerland (2005) [E1]
2005	Moscato Pablo Alberto, Mathieson Luke, Mendes Alexandre De Sousa, Berretta Regina Esther, 'The Electronic Primaries: Predicting the U.S. Presidency Using Feature Selection with Safe Data Reduction', Proceedings of the twenty eighth Australasian Computer Science Conference (ACSC 2005) Newcastle, Australia, January, 2005, Newcastle, N.S.W (2005) [E1]

Full Written Paper - Non Refereed (E2) (2 outputs)

Extract of Paper (E3) (3 outputs)