Dr Joseph Pegler
Lecturer
School of Environmental and Life Sciences
- Email:joseph.pegler@newcastle.edu.au
- Phone:(02) 4921 6129
Feeding the future
Dr Joseph Pegler is a molecular plant biologist whose work aims to deliver food security for our increasing population.
In a world with an increasing population in the face of climate change, the question of how we continue to feed the world with limited arable land is one that Joey is looking to address.
With continents experiencing increased frequencies of extreme temperatures, fires, floods and droughts how do we ensure that we can continue to grow the food we need to survive and thrive? “I’m passionate about making a positive change with my research,” Joey says. “Plant science is fundamental in helping us to develop better yielding plants to feed people and our livestock.”
Awarded a Fulbright Future Fellowship in 2021, Joey embraced the opportunity to work with some of the world’s leading researchers at the University of Minnesota. “Having the opportunity to take what I’ve learned here in Australia and work alongside some of the US’s leaders in the field was the perfect first step I needed,” Joey says.
Joey headed to the US in June 15, 2022 and will return in December the same year– however, the collaborations will continue long after he returns.
Unlocking the genetic code of plants
Just as sequencing the human genome helped us better understand the human condition, Joey’s work looks at the DNA and RNA of plants to find out how to get bigger yields out of crop plants and how plants can be improved to be better able to adapt to increasingly challenging climactic circumstances.
“We can take a plant that we know is tough and resilient and investigate its DNA and RNA with the hope to use this understanding to create a better, more efficient crop plant,” Joey says.
In the Plant Growth Facility on the Callaghan campus, Joey tends to a range of plant species. It’s a nice environment to work, when he’s not in the lab looking down a microscope. “We’re now really seeing a renaissance with houseplants – with people understanding how surrounding yourself with plants can be soothing and beneficial for your wellbeing,” Joey adds.
The rise in popular and rare houseplants is one of those areas that sees research like Joey’s brought into the mainstream. “What’s interesting is that what’s popular in houseplants are things like highly variegated plants with white, pink or other colours combining with the green,” Joey says. “Which is the exact opposite of what we’re trying to create with large, green surfaces being much more attractive from a photosynthesis perspective.”
Modifying plants is nothing new – we’ve been doing it since the Aztecs. Many of the common foods we eat, such as bananas, corn and carrots actually looked much different back in the day. “Bananas used to be filled with seeds and were much less palatable, and the thick orange carrots we typically see are huge in relation to the thin and multicoloured versions of old. Many of the foods we are familiar with in the fruit and vegetable aisle of the supermarket are a result of thousands of years of selective breeding by ancient and modern farmers,” Joey says.
There is often a consumer backlash to genetically modified food, something Joey attributes to a lack of understanding of the science behind the practice. “Scientists worked to develop golden rice, which is modified to be rich in vitamin A, something many populations are deficient in and that is so important health-wise. But there was a huge backlash delaying its release to consumers for many decades.”
There’s a complex balancing act between doing this important work – and ensuring that the public understands why it’s being done and how. For example, a massive uptake of hemp growing could be a game-changer in our societies. “It’s cheap and easy to grow and flourishes almost anywhere,” Joey says. “It’s got a wide range of uses in fabric, paper, food and so much more. But because there’s the association with marijuana, it’s not as widely grown as it should be.”
With a passion for making a positive change through research, and a desire to share his work more widely, Joey’s aim is to make an impact. And he’s working to ensure that generations worldwide will benefit from the work that he and his fellow researchers are undertaking in greening the world for food security and sustainability.
Feeding the future
Dr Joseph Pegler is a molecular plant biologist whose work aims to deliver food security for our increasing population.In a world with an increasing population in the face of climate change, the question of how we continue to feed the…
Career Summary
Biography
Dr Joseph Pegler is a lecturer in molecular plant biology at the University of Newcastle.
Joseph’s research aims to move towards addressing the serious and growing global issue of providing food security for an ever-growing global population. This is particularly relevant in an era dominated by anthropogenic driven climate change where farming is impacted by droughts, floods, and catastrophic wildfires.
Over the course of his career, Joseph hopes to develop strong interdisciplinary and cross-sector collaborations which he strongly believes are necessary for the discovery and implementation of solutions needed to address the significant global issues faced by the current and future generations in Australia and beyond.
Research focus
In his work, Joseph aims to identify and characterise novel sugar transporters of common bean with the hopes to increase the yield of grain and legume crops (Australian Research Council Discovery Project working alongside Professors Christopher Grof and John Patrick (FAA)). As high yielding crop varieties are reaching their yield limitation, increases in crop yield often stem from the long-standing and unsustainable practice of clearing biodiverse rich ecosystems for the cultivation of additional crops, largely contributing to the global carbon footprint. Therefore, increasing our current understanding of molecular pathways which underpin plant yield is fundamental for the development of higher yielding crops, an essential quantum leap required to achieve food security while reducing environmental damage.
Legumes are ideally positioned for a more sustainable approach to achieving human protein consumption globally. Possessing additional positive nutritional contents such as fibre, carbohydrates, low glycemic index (GI) and key vitamins, legumes are widely valued and consumed in African and Asian regions lacking readily accessible animal protein. An additional benefit of grain legumes is the ability of these plants to fix nitrogen, an ability which greatly limits the need for nitrogen fertilizers.
Having successfully secured a 2021 Postdoctoral Fulbright Future Scholarship a portion of this project will be completed in collaboration with Professor John Ward at the University of Minnesota (USA).
Joseph completed his PhD (November 2020) at the University of Newcastle under the supervision of Dr. Andrew Eamens (UON), Professor Christopher Grof (UON), Professor Robert Furbank (ANU) and Professor Christopher Lambrides (UQ). Joseph’s PhD study was focused on understanding the molecular pathways a plant can utilise to tolerate stressful growth conditions such as drought, high temperature or salinity. More specifically, this research identified and manipulated microRNA profiles in the plant species Arabidopsis thaliana (a common and longstanding model plant used within laboratory settings) to generate plants with an improved tolerance to unfavourable growth conditions.
Qualifications
- Doctor of Philosophy in Biological Sciences, University of Newcastle
- Bachelor of Biotechnology, University of Newcastle
- Bachelor of Biotechnology (Honours), University of Newcastle
Keywords
- Abiotic stress
- Plant physiology
- RNA silencing
- Sugar transport
- microRNAs
Languages
- English (Mother)
Fields of Research
Code | Description | Percentage |
---|---|---|
310806 | Plant physiology | 50 |
310803 | Plant cell and molecular biology | 50 |
Professional Experience
UON Appointment
Title | Organisation / Department |
---|---|
Lecturer | University of Newcastle School of Environmental and Life Sciences Australia |
Awards
Award
Year | Award |
---|---|
2019 |
Collaboration Excellence Team Award Faculty of Science | University of Newcastle |
2018 |
Best Higher Degree by Research Engagement Award (Community, Industry or International) Faculty of Science | University of Newcastle |
Member
Year | Award |
---|---|
2022 |
Fellow of the Higher Education Academy (UK) Advance HE |
Scholarship
Year | Award |
---|---|
2021 |
Fulbright Future Scholarship (Postdoctoral) Australian-American Fulbright Commission |
2018 |
Global Voices’ Research Fellowship for COP24 UN Framework Convention on Climate Change (UNFCCC) Global Voices |
Teaching Award
Year | Award |
---|---|
2022 |
Outstanding Contribution to Teaching Award College of Engineering, Science and Environment, University of Newcastle |
2021 |
Sessional Academic Teaching Excellence College of Engineering, Science and Environment, University of Newcastle |
Invitations
Speaker
Year | Title / Rationale |
---|---|
2022 |
Characterisation of sugar transporters functioning in the seeds of common bean Plant and Microbial Biology Seminar Series |
Teaching
Code | Course | Role | Duration |
---|---|---|---|
BTEC2230 |
Biomolecules Faculty of Science | University of Newcastle |
Lecturer | 1/1/2021 - 1/1/2022 |
BIOL3001 |
Advanced Laboratory Skills in Biological Sciences College of Engineering, Science and Environment, University of Newcastle |
Lecturer | 1/1/2022 - 1/1/2024 |
BIOL2010 |
Biochemistry College of Engineering, Science and Environment, University of Newcastle |
Lecturer | 1/1/2022 - 1/1/2023 |
SCIE1002 |
Multidisciplinary Laboratories College of Engineering, Science and Environment, University of Newcastle |
Lecturer | 1/1/2021 - 1/1/2024 |
BIOL2050 |
Molecular Genetics College of Engineering, Science and Environment, University of Newcastle |
Course Coordinator/ Lecturer | 1/1/2022 - 1/1/2024 |
BIOL2002 |
Laboratory Skills in Biological Systems College of Engineering, Science & Environment, University of Newcastle |
Course Coordinator/ Lecturer | 1/1/2023 - 1/1/2024 |
BIOL2001 |
Molecular Laboratory Skills for Biological Sciences College of Engineering, Science and Environment, University of Newcastle |
Lecturer | 1/1/2022 - 1/1/2023 |
BIOL2220 |
Plant Adaptation to Climate Change College of Engineering, Science & Environment, University of Newcastle |
Course Coordinator/ Lecturer | 1/1/2023 - 1/12/2023 |
Publications
For publications that are currently unpublished or in-press, details are shown in italics.
Chapter (1 outputs)
Year | Citation | Altmetrics | Link | ||||||||
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2019 |
Pegler JL, Grof CPL, Eamens AL, 'The plant microRNA pathway: The production and action stages', Plant MicroRNAs: Methods and Protocols, Springer, New York, NY 15-39 (2019) [B1]
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Nova |
Journal article (14 outputs)
Year | Citation | Altmetrics | Link | ||||||||
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2023 |
Pegler JL, Oultram JMJ, Mann CWG, Carroll BJ, Grof CPL, Eamens AL, 'Miniature Inverted-Repeat Transposable Elements: Small DNA Transposons That Have Contributed to Plant
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2023 |
Pegler JL, Grof CP, Patrick JW, 'Sugar loading of crop seeds - a partnership of phloem, plasmodesmal and membrane transport.', New Phytol, 239 1584-1602 (2023) [C1]
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2022 |
Oultram JMJ, Pegler JL, Symons GM, Bowser TA, Eamens AL, Grof CPL, Korbie DJ, 'Genetic Variants Associated with Long-Terminal Repeats Can Diagnostically Classify Cannabis Varieties', INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23 (2022) [C1]
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2021 |
Pegler JL, Nguyen DQ, Oultram JMJ, Grof CPL, Eamens AL, 'Molecular manipulation of the mir396 and mir399 expression modules alters the response of arabidopsis thaliana to phosphate stress', Plants, 10 (2021) [C1] In plant cells, the molecular and metabolic processes of nucleic acid synthesis, phospholipid production, coenzyme activation and the generation of the vast amount of chemical ene... [more] In plant cells, the molecular and metabolic processes of nucleic acid synthesis, phospholipid production, coenzyme activation and the generation of the vast amount of chemical energy required to drive these processes relies on an adequate supply of the essential macronutrient, phosphorous (P). The requirement of an appropriate level of P in plant cells is evidenced by the intricately linked molecular mechanisms of P sensing, signaling and transport. One such mechanism is the posttranscriptional regulation of the P response pathway by the highly conserved plant microRNA (miRNA), miR399. In addition to miR399, numerous other plant miRNAs are also required to respond to environmental stress, including miR396. Here, we exposed Arabidopsis thaliana (Arabidopsis) transformant lines which harbor molecular modifications to the miR396 and miR399 expression modules to phosphate (PO4) starvation. We show that molecular alteration of either miR396 or miR399 abundance afforded the Arabidopsis transformant lines different degrees of tolerance to PO4 starvation. Furthermore, RT-qPCR assessment of PO4-starved miR396 and miR399 transformants revealed that the tolerance displayed by these plant lines to this form of abiotic stress most likely stemmed from the altered expression of the target genes of these two miRNAs. Therefore, this study forms an early step towards the future development of molecularly modified plant lines which possess a degree of tolerance to growth in a PO4 deficient environment.
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2021 |
Pegler JL, Oultram JMJ, Grof CPL, Eamens AL, 'Molecular Manipulation of the miR399/
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2021 |
Pegler JL, Oultram JMJ, Duc QN, Grof CPL, Eamens AL, 'MicroRNA-Mediated Responses to Cadmium Stress in Arabidopsis thaliana', PLANTS-BASEL, 10 (2021) [C1]
|
Nova | |||||||||
2021 |
Oultram JMJ, Pegler JL, Bowser TA, Ney LJ, Eamens AL, Grof CPL, 'Cannabis sativa: Interdisciplinary Strategies and Avenues for Medical and Commercial Progression Outside of CBD and THC', BIOMEDICINES, 9 (2021) [C1]
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Nova | |||||||||
2021 |
Pegler JL, Nguyen DQ, Oultram JMJ, Grof CPL, Eamens AL, 'Molecular manipulation of the mir396/grf expression module alters the salt stress response of arabidopsis thaliana', Agronomy, 11 (2021) [C1] We previously demonstrated that microRNA396 (miR396) abundance is altered in 15-day-old Arabidopsis thaliana (Arabidopsis) whole seedlings following their exposure to a 7-day salt... [more] We previously demonstrated that microRNA396 (miR396) abundance is altered in 15-day-old Arabidopsis thaliana (Arabidopsis) whole seedlings following their exposure to a 7-day salt stress treatment regime. We, therefore, used a molecular modification approach to generate two new Arabidopsis transformant populations with reduced (MIM396 plants) and elevated (MIR396 plants) miR396 abundance. The exposure of 8-day-old wild-type Arabidopsis whole seedlings and a representative plant line of the MIM396 and MIR396 transformant populations to a 7-day salt stress treatment regime revealed unique phenotypic and physiological responses to the imposed stress by unmodified wild-type Arabidopsis plants and the MIM396 and MIR396 transformat lines. A quantitative reverse transcriptase polymerase chain reaction (RT-qPCR) approach was, therefore, applied to demonstrate that the plant line specific responses to salt stress likely stemmed from the unique molecular profile of each of the GROWTH REGULATING FACTOR (GRF) transcription factor gene family members which form posttranscriptional targets of miR396-directed expression regulation. RT-qPCR additionally revealed that, in 15-day-old Arabidopsis whole seedlings, the three previously identified putative target genes of miR396 belonging to the NEUTRAL/ALKALINE NONLYSOSOMAL CERAMIDASE-LIKE (NCER) gene family, including NCER1, NCER2, and NCER3, do not form targets of miR396-directed expression regulation at the posttranscriptional level. Taken together, the phenotypic and molecular analyses presented here demonstrate that alteration of the miR396/GRF expression module is central to the molecular response of Arabidopsis to salt stress.
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Nova | |||||||||
2020 |
Pegler JL, Nguyen DQ, Grof CPL, Eamens AL, 'Profiling of the salt stress responsive MicroRNA landscape of C4 genetic model species setaria viridis (l.) beauv', Agronomy, 10 (2020) [C1]
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Nova | |||||||||
2020 |
Nguyen DQ, Brown CW, Pegler JL, Eamens AL, Grof CPL, 'Molecular manipulation of microRNA397 abundance influences the development and salt stress response of arabidopsis thaliana', International Journal of Molecular Sciences, 21 1-24 (2020) [C1] Arabidopsis thaliana (Arabidopsis) has been used extensively as a heterologous system for molecular manipulation to genetically characterize both dicotyledonous and monocotyledono... [more] Arabidopsis thaliana (Arabidopsis) has been used extensively as a heterologous system for molecular manipulation to genetically characterize both dicotyledonous and monocotyledonous plant species. Here, we report on Arabidopsis transformant lines molecularly manipulated to overaccumulate the small regulatory RNA microRNA397 (miR397) from the emerging C4 monocotyledonous grass model species Setaria viridis (S. viridis). The generated transformant lines, termed SvMIR397 plants, displayed a range of developmental phenotypes that ranged from a mild, wild-type-like phenotype, to a severe, full dwarfism phenotype. Reverse transcriptase quantitative polymerase chain reaction (RT-qPCR)-based profiling of the SvMIR397 transformant population revealed a strong correlation between the degree of miR397 over-accumulation, repressed LACCASE (LAC) target gene expression, reduced lignin content, and the severity of the developmental phenotype displayed by SvMIR397 transformants. Further, exposure of SvMIR397 transformants to a 7-day regime of salt stress revealed the SvMIR397 transformant lines to be more sensitive to the imposed stress than were wild-type Arabidopsis plants. Taken together, the findings reported here via the use of Arabidopsis as a heterologous system show that the S. viridis miR397 small regulatory RNA is able to repress the expression of three Arabidopsis LAC genes which led to reduced lignin content and increased salt stress sensitivity.
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Nova | |||||||||
2019 |
Pegler JL, Oultram JMJ, Grof CPL, Eamens AL, 'DRB1, DRB2 and DRB4 Are Required for Appropriate Regulation of the microRNA399/PHOSPHATE2 Expression Module in Arabidopsis thaliana.', Plants, 8 (2019) [C1]
|
Nova | |||||||||
2019 |
Pegler JL, Oultram JMJ, Grof CPL, Eamens AL, 'Profiling the Abiotic Stress Responsive microRNA Landscape of Arabidopsis thaliana.', Plants, 8 (2019) [C1]
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Nova | |||||||||
2018 |
Pegler JL, Grof CPL, Eamens AL, 'Profiling of the Differential Abundance of Drought and Salt Stress-Responsive MicroRNAs Across Grass Crop and Genetic Model Plant Species', AGRONOMY-BASEL, 8 (2018) [C1]
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2016 |
McGaughey SA, Osborn HL, Chen L, Pegler JL, Tyerman SD, Furbank RT, et al., 'Roles of aquaporins in setaria viridis stem development and sugar storage', Frontiers in Plant Science, 7 (2016) [C1] Setaria viridis is a C4 grass used as a model for bioenergy feedstocks. The elongating internodes in developing S. viridis stems grow from an intercalary meristem at the base, and... [more] Setaria viridis is a C4 grass used as a model for bioenergy feedstocks. The elongating internodes in developing S. viridis stems grow from an intercalary meristem at the base, and progress acropetally toward fully expanded cells that store sugar. During stem development and maturation, water flow is a driver of cell expansion and sugar delivery. As aquaporin proteins are implicated in regulating water flow, we analyzed elongating and mature internode transcriptomes to identify putative aquaporin encoding genes that had particularly high transcript levels during the distinct stages of internode cell expansion and maturation. We observed that SvPIP2;1 was highly expressed in internode regions undergoing cell expansion, and SvNIP2;2 was highly expressed in mature sugar accumulating regions. Gene co-expression analysis revealed SvNIP2;2 expression was highly correlated with the expression of five putative sugar transporters expressed in the S. viridis internode. To explore the function of the proteins encoded by SvPIP2;1 and SvNIP2;2, we expressed them in Xenopus laevis oocytes and tested their permeability to water. SvPIP2;1 and SvNIP2;2 functioned as water channels in X. laevis oocytes and their permeability was gated by pH. Our results indicate that SvPIP2;1 may function as a water channel in developing stems undergoing cell expansion and SvNIP2;2 is a candidate for retrieving water and possibly a yet to be determined solute from mature internodes. Future research will investigate whether changing the function of these proteins influences stem growth and sugar yield in S. viridis.
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Show 11 more journal articles |
Grants and Funding
Summary
Number of grants | 8 |
---|---|
Total funding | $190,105 |
Click on a grant title below to expand the full details for that specific grant.
20234 grants / $75,700
College Equipment Funding $38,000
Funding body: College of Engineering, Science & Environment, University of Newcastle
Funding body | College of Engineering, Science & Environment, University of Newcastle |
---|---|
Scheme | College Capex and Equipment Funding |
Role | Lead |
Funding Start | 2023 |
Funding Finish | 2023 |
GNo | |
Type Of Funding | Internal |
Category | INTE |
UON | N |
College Equipment Funding$37,000
Funding body: College of Engineering, Science & Environment, University of Newcastle
Funding body | College of Engineering, Science & Environment, University of Newcastle |
---|---|
Scheme | College Capex and Equipment Funding |
Role | Lead |
Funding Start | 2023 |
Funding Finish | 2023 |
GNo | |
Type Of Funding | Internal |
Category | INTE |
UON | N |
Incentive for Publishing in High Quality Journals$500
Funding body: College of Engineering, Science and Environment, University of Newcastle
Funding body | College of Engineering, Science and Environment, University of Newcastle |
---|---|
Scheme | Incentives for Publishing in High Quality Journals |
Role | Lead |
Funding Start | 2023 |
Funding Finish | 2023 |
GNo | |
Type Of Funding | Internal |
Category | INTE |
UON | N |
Incentive for Publishing in High Quality Journals$200
Funding body: College of Engineering, Science & Environment, University of Newcastle
Funding body | College of Engineering, Science & Environment, University of Newcastle |
---|---|
Scheme | Incentive for Publishing in High Quality Journals |
Role | Lead |
Funding Start | 2023 |
Funding Finish | 2023 |
GNo | |
Type Of Funding | Internal |
Category | INTE |
UON | N |
20221 grants / $7,700
College Fellowship Accelerator Investment funding$7,700
Funding body: College of Engineering, Science and Environment, University of Newcastle
Funding body | College of Engineering, Science and Environment, University of Newcastle |
---|---|
Scheme | Fellowship Accelerator Scheme |
Role | Lead |
Funding Start | 2022 |
Funding Finish | 2022 |
GNo | |
Type Of Funding | Internal |
Category | INTE |
UON | N |
20172 grants / $10,450
Australian Plant Phenomics Facility Postgraduate Internship Award $10,000
Funding body: Australian Plant Phenomics Facility
Funding body | Australian Plant Phenomics Facility |
---|---|
Scheme | Australian Plant Phenomics Facility Postgraduate Internship Award |
Role | Lead |
Funding Start | 2017 |
Funding Finish | 2017 |
GNo | |
Type Of Funding | C1700 - Aust Competitive - Other |
Category | 1700 |
UON | N |
Australian Society of Plant Scientists Student Travel Grant$450
Funding body: Australian Society of Plant Scientists
Funding body | Australian Society of Plant Scientists |
---|---|
Scheme | Australian Society of Plant Scientists Student Travel Grant |
Role | Lead |
Funding Start | 2017 |
Funding Finish | 2017 |
GNo | |
Type Of Funding | External |
Category | EXTE |
UON | N |
20161 grants / $96,255
Australian Postgraduate Award$96,255
Funding body: Australian Government
Funding body | Australian Government |
---|---|
Scheme | Australian Postgraduate Award |
Role | Lead |
Funding Start | 2016 |
Funding Finish | 2020 |
GNo | |
Type Of Funding | C1600 - Aust Competitive - StateTerritory Govt |
Category | 1600 |
UON | N |
Research Supervision
Number of supervisions
Current Supervision
Commenced | Level of Study | Research Title | Program | Supervisor Type |
---|---|---|---|---|
2024 | Honours | Determining the role of PvSUGCAR1 in the development of Phaseolus vulgaris (common bean). | Biological Sciences, College of Engineering, Science and Environment, University of Newcastle | Principal Supervisor |
2023 | Honours | Identification and functional characterisation of SWEETs in the seed coat of Phaseolus vulgaris. | Biological Sciences, College of Engineering, Science and Environment, University of Newcastle | Principal Supervisor |
2020 | PhD | Uncovering the Molecular Basis of Vacuole Invertase Mediated Regulation of Cotton Fibre Initiation | PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle | Principal Supervisor |
2017 | PhD | Identification of Genetic Bottlenecks Limiting Assimilate Utilization in Plant Reproductive Organs | PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle | Principal Supervisor |
Past Supervision
Year | Level of Study | Research Title | Program | Supervisor Type |
---|---|---|---|---|
2022 | PhD | Cellular Pathways, Genetic Analysis and Molecular Biology of Phi Thickening Induction in Brassica Roots | PhD (Biological Sciences), College of Engineering, Science and Environment, The University of Newcastle | Principal Supervisor |
Research Collaborations
The map is a representation of a researchers co-authorship with collaborators across the globe. The map displays the number of publications against a country, where there is at least one co-author based in that country. Data is sourced from the University of Newcastle research publication management system (NURO) and may not fully represent the authors complete body of work.
Country | Count of Publications | |
---|---|---|
Australia | 16 | |
Viet Nam | 3 | |
United States | 1 |
Dr Joseph Pegler
Position
Lecturer
School of Environmental and Life Sciences
College of Engineering, Science and Environment
Contact Details
joseph.pegler@newcastle.edu.au | |
Phone | (02) 4921 6129 |
Office
Room | B112 |
---|---|
Building | Biology Building |
Location | Callaghan University Drive Callaghan, NSW 2308 Australia |